Factsheet for Bra005827.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80928	Canola	plastid	98.56	98.56
CDY11316	Canola	plastid	97.98	97.42
CDY43444	Canola	plastid	70.03	91.35
AT5G04900.1	Thale cress	plastid	88.76	88.51
VIT_01s0010g00590.t01	Wine grape	plastid	68.3	68.7
TraesCS4A01G299400.1	Wheat	plastid	67.15	67.73
TraesCS4D01G012100.1	Wheat	plastid	67.15	67.54
Solyc05g032660.2.1	Tomato	plastid	66.86	67.05
KRH13102	Soybean	plastid	67.15	66.76
KXG37915	Sorghum	plastid	65.42	66.57
TraesCS6B01G357800.1	Wheat	plastid	65.71	66.28
Zm00001d013651_P001	Maize	plastid	65.13	66.28
Os03t0654600-01	Rice	plastid	65.42	66.18
TraesCS4D01G053400.2	Wheat	plastid	62.82	64.88
TraesCS4A01G261200.1	Wheat	plastid	60.23	63.53
GSMUA_Achr2P03080_001	Banana	plastid	64.27	62.82
PGSC0003DMT400033934	Potato	plastid	11.82	36.28
Bra034882.1-P	Field mustard	cytosol	33.14	23.14
Bra032697.1-P	Field mustard	cytosol, mitochondrion	33.72	22.12

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.2	EnsemblPlantsGene:Bra005827	EnsemblPlants:Bra005827.1	EnsemblPlants:Bra005827.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015996
GO:GO:0016491	GO:GO:0034256	GO:GO:0055114	UniProt:M4CNN9	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR24314	PANTHER:PTHR24314:SF15	InterPro:SDR_fam
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0001AE6154	SEG:seg	:	:

Description

AT5G04900 (E=1e-170) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA03:+:809693..811771

Molecular Weight (calculated)

37754.5 Da

IEP (calculated)

9.429

GRAVY (calculated)

-0.114

Length

347 amino acids

Sequence
(BLAST)

001: MATSSGFHIS SSPFLRLRSS SVAYAAQPPF LSPCNGRSLA ESFGLATVTV SRQNLSVSPP SAVVEARISG TREPMTPPYN VLITGSTKGI GHALAREFLK
101: AGDNVVICSR SAERVESVVK SLKEEYGEHV WGTKCDVREG KDVKDLVSYC QKNLKYIDIW INNAGSNAYS FKPLSEASDE DLIEVVKTNT LGLMLCCREA
201: MNMMLTQSRG GHIFNIDGAG SDGRPTPRFA AYGATKRSVV HLTKSLQAEL QMQDVKNVVV HNLSPGMVTT DLLMSGATTK QAKFFINVLA EPAEVVAEYL
301: VPNIRAIPAS GSMKPTYIRF LTGIKAYTKI FSRVALGARK NRYVTEE

Best Arabidopsis Sequence Match ( AT5G04900.1 )
(BLAST)

001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE

Arabidopsis Description

NOLChlorophyll(ide) b reductase NOL, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEU3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.