Factsheet for GSMUA_Achr2P03080_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g00590.t01	Wine grape	plastid	66.76	68.7
TraesCS4A01G299400.1	Wheat	plastid	66.2	68.31
Os03t0654600-01	Rice	plastid	65.92	68.22
TraesCS4D01G012100.1	Wheat	plastid	66.2	68.12
KRH13102	Soybean	plastid	66.76	67.91
TraesCS6B01G357800.1	Wheat	plastid	65.07	67.15
KXG37915	Sorghum	plastid	63.94	66.57
Zm00001d013651_P001	Maize	plastid	63.66	66.28
Solyc05g032660.2.1	Tomato	plastid	63.94	65.61
TraesCS4A01G261200.1	Wheat	plastid	60.28	65.05
TraesCS4D01G053400.2	Wheat	plastid	61.13	64.58
CDX80928	Canola	plastid	62.82	64.27
Bra005827.1-P	Field mustard	plastid	62.82	64.27
AT5G04900.1	Thale cress	plastid	62.82	64.08
CDY11316	Canola	plastid	62.82	63.9
CDY43444	Canola	plastid	40.85	54.51
PGSC0003DMT400033934	Potato	plastid	9.58	30.09
GSMUA_Achr7P10870_001	Banana	mitochondrion	33.24	26.34
GSMUA_Achr10P...	Banana	cytosol	33.8	22.56

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015996	GO:GO:0016491	GO:GO:0034256	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr2G03080_001	EnsemblPlants:GSMUA_Achr2P03080_001	EnsemblPlants:GSMUA_Achr2T03080_001	UniProt:M0S4P9	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR24314	PANTHER:PTHR24314:SF15	InterPro:SDR_fam
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI000296EC66	SEG:seg	:	:

Description

Chlorophyll(ide) b reductase NOL, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr2G03080_001]

Coordinates

chr2:+:8792635..8800008

Molecular Weight (calculated)

38948.8 Da

IEP (calculated)

10.104

GRAVY (calculated)

-0.190

Length

355 amino acids

Sequence
(BLAST)

001: MASVSSLPAF AISDYRTRSR VPARSRSSPN SGISGPGAGL DSLGRAAASC RRLNPWHRRG DWNLGPVRAE SHDVKKTERE PMVPPYNVLI TGSTKGIGYA
101: LAREFLKAGD NVLICSRSVE RVESAIQSLR KEFGEHRVWG TACDVRVAKD VKALVAFARE TIGYIDIWIN NAGSNAYSFK PLAETSDEDL MEVVTTNTLG
201: LMICCREAIN MMLNQPRGGH IFNIDGAGSD GRPTPRFAAY GATKRSVVHL TKSLQAELQM QEVKNVMVHN LSPGMVTTDL LMSGATTKQA KFFINILAEP
301: PDVVAAFLVP SIRSVPSSQS MKPTYIRFLT GFKAYSQIFS RLAFGARRNR YLVED

Best Arabidopsis Sequence Match ( AT5G04900.1 )
(BLAST)

001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE

Arabidopsis Description

NOLChlorophyll(ide) b reductase NOL, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEU3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.