CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g00590.t01	Wine grape	plastid	69.91	70.72
Solyc05g032660.2.1	Tomato	plastid	69.63	70.23
AT5G04900.1	Thale cress	plastid	67.62	67.82
Os03t0654600-01	Rice	plastid	66.48	67.64
Bra005827.1-P	Field mustard	plastid	66.76	67.15
CDY11316	Canola	plastid	66.76	66.76
GSMUA_Achr2P03080_001	Banana	plastid	67.91	66.76
CDX80928	Canola	plastid	66.19	66.57
TraesCS4D01G012100.1	Wheat	plastid	65.04	65.8
TraesCS4A01G299400.1	Wheat	plastid	64.47	65.41
KXG37915	Sorghum	plastid	63.9	65.4
Zm00001d013651_P001	Maize	plastid	63.9	65.4
TraesCS6B01G357800.1	Wheat	plastid	64.18	65.12
TraesCS4D01G053400.2	Wheat	plastid	61.03	63.39
TraesCS4A01G261200.1	Wheat	plastid	59.03	62.61
CDY43444	Canola	plastid	42.12	55.26
PGSC0003DMT400033934	Potato	plastid	11.17	34.51
KRH48384	Soybean	plastid	34.67	23.54
KRH39291	Soybean	plastid	34.67	23.5

Protein Annotations

EntrezGene:100797874	Gene3D:3.40.50.720	MapMan:7.12.6.6.4.2	EMBL:ACUP02009539	EnsemblPlantsGene:GLYMA_15G215900	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0010304
GO:GO:0015996	GO:GO:0016491	GO:GO:0019538	GO:GO:0034256	GO:GO:0055114	UniProt:I1MI92
EnsemblPlants:KRH13102	ProteinID:KRH13102	ProteinID:KRH13102.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR24314	PANTHER:PTHR24314:SF15	InterPro:SDR_fam	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	UniParc:UPI000233B5D8	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:35360153..35369009

Molecular Weight (calculated)

38260.0 Da

IEP (calculated)

9.583

GRAVY (calculated)

-0.169

Length

349 amino acids

Sequence
(BLAST)

001: MASTTTLSFH FPYPTTSTLS SHSQLSPSPQ PSQFKPCTVA SRQNLCTSNT LSVSASRKNS TSPIFLATAS GKSEPMLPPF NVLITGSTKG IGYALAKEFL
101: KAGDNVLICS RSDERVKTAV QNLRVEFGEQ HVWGTKCDVK NAEDVKNLVS FAQEKMKYID IWINNAGSNA YSYKPLVEAS DEDLIEVVTT NTLGLMICCR
201: EAIKMMVNQP RGGHIFNIDG AGSDGRPTPR FAAYGATKRS VVHLTKSLQA ELRMQDVKNV VVHNLSPGMV TTDLLMSGVN TKQAKFFINV LAEPAEVVAE
301: YLVPNIRSVP ANGSMKPTYI RFLTGLKAYS QIFSRLAFGA RRNRYILED

Best Arabidopsis Sequence Match ( AT5G04900.1 )
(BLAST)

001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE

Arabidopsis Description

NOLChlorophyll(ide) b reductase NOL, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEU3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.