CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13102	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	KRH13102	AT5G04900.1	22366162
AT4G13250.1	KRH13102	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48384	Soybean	plastid	94.37	94.55
GSMUA_Achr7P10870_001	Banana	mitochondrion	66.02	75.89
CDY67729	Canola	cytosol	45.24	74.68
VIT_11s0016g03890.t01	Wine grape	plastid	73.01	72.73
AT4G13250.1	Thale cress	cytosol	66.8	69.35
PGSC0003DMT400077668	Potato	cytosol	65.05	68.93
Solyc07g024000.2.1	Tomato	plastid	64.47	68.59
CDY47326	Canola	cytosol, mitochondrion	65.44	68.5
Bra034882.1-P	Field mustard	cytosol	65.83	68.21
CDY01120	Canola	cytosol, mitochondrion	67.77	68.03
Os01t0227100-01	Rice	mitochondrion	66.02	67.46
HORVU3Hr1G030890.1	Barley	plastid	65.44	67.4
TraesCS3D01G159800.1	Wheat	mitochondrion	65.24	67.33
TraesCS3B01G179100.1	Wheat	mitochondrion	65.05	66.87
EES02213	Sorghum	plastid	65.83	66.21
Bra032697.1-P	Field mustard	cytosol, mitochondrion	67.77	65.97
Zm00001d039312_P001	Maize	plastid	65.44	65.95
TraesCS3A01G151900.1	Wheat	mitochondrion	56.31	65.91
GSMUA_Achr10P...	Banana	cytosol	67.96	65.79
KXG33129	Sorghum	cytosol	5.44	38.89
KRH13102	Soybean	plastid	23.5	34.67
OQU77869	Sorghum	mitochondrion	4.85	32.05

Protein Annotations

EntrezGene:100797007	Gene3D:3.40.50.720	MapMan:7.12.6.6.4.1	EMBL:ACUP02005930	EnsemblPlantsGene:GLYMA_09G191200	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0010304	GO:GO:0015996	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0034256
GO:GO:0055114	UniProt:I1L4I7	EnsemblPlants:KRH39291	ProteinID:KRH39291	ProteinID:KRH39291.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	InterPro:SDR_fam	SUPFAM:SSF51735
TMHMM:TMhelix	UniParc:UPI0002339002	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:41587635..41591803

Molecular Weight (calculated)

56599.6 Da

IEP (calculated)

9.728

GRAVY (calculated)

-0.089

Length

515 amino acids

Sequence
(BLAST)

001: MATVVKLHVF PESLNQHKTR LLRRGFGSCP SPGVLGFGHK NYDQFSVKVC RAFRTEDGGD VKEKKFRNLK KNEEKTKRES GFWSSLKSIL LRNFMVGSKS
101: DDEYRQAVVK VEGLLSSIAI QIGRYIVTMM STGVILSIGF QMSGGDSQMD ALIWYSWLGG VIIGTMIGAN MVLEEHCRAG PRNVVITGST RGLGKALARE
201: FLLSGDRVIV TSRSPESVQD TIKELEENLK EGIANAVGSS LTKLSQAKVI GISCDVCEPH DVQRLANFAV KELGHIDIWI NNAGTNKGFR PLLQFSDEDI
301: KQIVSTNLVG SILCTREAVR IMRNQANAGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQL QGSLLKECKR SKVGVHTASP GMVLTDLLLS GSTVQNRQMF
401: NIICELPETV ARTLVPRMRV VKGTGKAINY LTPPRILLAL ITAWLRQGRW FDDQGRALYA AEADRLRNWA EDRARFSFTD AMEMYTENTW LSVFSLSVVC
501: AFIILSSTGS NLPGT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.