Factsheet for Os01t0227100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0654600-01	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	Os03t0654600-01	AT5G04900.1	22366162
AT4G13250.1	Os03t0654600-01	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G151900.1	Wheat	mitochondrion	78.97	90.45
TraesCS3D01G159800.1	Wheat	mitochondrion	89.48	90.38
EES02213	Sorghum	plastid	91.07	89.65
TraesCS3B01G179100.1	Wheat	mitochondrion	89.09	89.62
HORVU3Hr1G030890.1	Barley	plastid	88.89	89.6
Zm00001d039312_P001	Maize	plastid	90.48	89.24
GSMUA_Achr7P10870_001	Banana	mitochondrion	71.23	80.13
CDY67729	Canola	cytosol	45.24	73.08
GSMUA_Achr10P...	Banana	cytosol	73.21	69.36
PGSC0003DMT400077668	Potato	cytosol	64.88	67.28
KRH48384	Soybean	plastid	68.45	67.12
VIT_11s0016g03890.t01	Wine grape	plastid	68.65	66.92
Solyc07g024000.2.1	Tomato	plastid	63.49	66.12
KRH39291	Soybean	plastid	67.46	66.02
AT4G13250.1	Thale cress	cytosol	63.49	64.52
CDY47326	Canola	cytosol, mitochondrion	62.5	64.02
Bra034882.1-P	Field mustard	cytosol	62.5	63.38
CDY01120	Canola	cytosol, mitochondrion	64.48	63.35
Bra032697.1-P	Field mustard	cytosol, mitochondrion	64.48	61.44
KXG33129	Sorghum	cytosol	7.14	50.0
OQU77869	Sorghum	mitochondrion	6.55	42.31
Os03t0654600-01	Rice	plastid	24.4	35.86

Protein Annotations

Gene3D:3.40.50.720	EntrezGene:4327178	MapMan:7.12.6.6.4.1	EMBL:AB255025	EMBL:AK068523	ProteinID:BAD81513.1
ProteinID:BAD82407.1	ProteinID:BAF04382.1	ProteinID:BAS71128.1	ProteinID:BAS71129.1	ncoils:Coil	ProteinID:EEE54154.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0010304	GO:GO:0015996	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0019538	GO:GO:0034256	GO:GO:0042170	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf
EnsemblPlantsGene:Os01g0227100	EnsemblPlants:Os01t0227100-01	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19
UniProt:Q5N800	InterPro:SDR_fam	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI000049E7B7	RefSeq:XP_015621887.1
SEG:seg	:	:	:	:	:

Description

NON-YELLOW COLORING 1Chlorophyll b reductase, Leaf senescence (Os01t0227100-01);Similar to oxidoreductase. (Os01t0227100-02)

Coordinates

chr1:+:7024297..7030591

Molecular Weight (calculated)

54719.0 Da

IEP (calculated)

9.885

GRAVY (calculated)

-0.127

Length

504 amino acids

Sequence
(BLAST)

001: MAAAAVVHLS VHGRLRRSPE LHARPYHRPS LLRCRAFKQE ADNGGEEASS SPPPPTTAEA RRRRKGPLYK LKAAIQGLAG SRSAAAEAYG GEYQRAVEKA
101: EEIFFSVATQ VGRYVITMMS SGVVLGVGFQ LSGGDSQMNT LIWYSWLGGV IIGTMIGANS VLEEHCKAGP RNVVITGSTR GLGKALAREF LLSGDRVVIA
201: SRSPESVLQT INELEENIQE GLSVAKKKQR EILLHAKVVG TSCDVCKPED VKKLVNFAKD ELGSIDIWIN NAGTNKGFRP LVNFSDEDIS QIVSTNLVGS
301: LLCTREAMNV MQHQQKGGHV FNMDGAGSGG SSTPLTAVYG STKCGLRQFQ ASLLKESRRS KVGVHTASPG MVLTDLLLSG SSLRNKQMFN LICELPETVA
401: RTLVPRMRVV KGSGKAINYL TPPRILLALV TAWVRRGRWF DEEGRAVYAA EADRIRNWAE SRARFSFTDA MEMYTENTWV SVFSLSVVCA FIILSSSGGP
501: LPGT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.