Factsheet for TraesCS3A01G151900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G261200.1	plastid
TraesCS4A01G299400.1	plastid
TraesCS4D01G012100.1	plastid
TraesCS4D01G053400.2	plastid
TraesCS6B01G357800.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	TraesCS4A01G261200.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4A01G299400.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4D01G012100.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4D01G053400.2	AT5G04900.1	22366162
AT4G13250.1	TraesCS6B01G357800.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4A01G261200.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4A01G299400.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4D01G012100.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4D01G053400.2	AT5G04900.1	22366162
AT4G13250.1	TraesCS6B01G357800.1	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G159800.1	Wheat	mitochondrion	99.55	87.78
TraesCS3B01G179100.1	Wheat	mitochondrion	98.64	86.63
HORVU3Hr1G030890.1	Barley	plastid	98.41	86.6
Os01t0227100-01	Rice	mitochondrion	90.45	78.97
EES02213	Sorghum	plastid	88.18	75.78
Zm00001d039312_P001	Maize	plastid	87.95	75.73
GSMUA_Achr7P10870_001	Banana	mitochondrion	68.86	67.63
CDY67729	Canola	cytosol	42.27	59.62
GSMUA_Achr10P...	Banana	cytosol	71.36	59.02
VIT_11s0016g03890.t01	Wine grape	plastid	67.27	57.25
KRH48384	Soybean	plastid	66.82	57.2
PGSC0003DMT400077668	Potato	cytosol	62.27	56.38
KRH39291	Soybean	plastid	65.91	56.31
AT4G13250.1	Thale cress	cytosol	63.18	56.05
Solyc07g024000.2.1	Tomato	plastid	60.68	55.17
CDY47326	Canola	cytosol, mitochondrion	61.14	54.67
CDY01120	Canola	cytosol, mitochondrion	63.41	54.39
Bra034882.1-P	Field mustard	cytosol	61.36	54.33
Bra032697.1-P	Field mustard	cytosol, mitochondrion	63.41	52.74
KXG33129	Sorghum	cytosol	6.82	41.67
OQU77869	Sorghum	mitochondrion	7.27	41.03
TraesCS4A01G299400.1	Wheat	plastid	28.41	36.34
TraesCS4A01G261200.1	Wheat	plastid	25.45	34.04

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009536	GO:GO:0009987	GO:GO:0010304	GO:GO:0015996	GO:GO:0016491	GO:GO:0019538
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	InterPro:SDR_fam
SUPFAM:SSF51735	EnsemblPlantsGene:TraesCS3A01G151900	EnsemblPlants:TraesCS3A01G151900.1	TIGR:cd05233	:	:

Description

No Description!

Coordinates

chr3A:+:142573682..142577963

Molecular Weight (calculated)

47533.5 Da

IEP (calculated)

9.348

GRAVY (calculated)

-0.092

Length

440 amino acids

Sequence
(BLAST)

001: MAAAVVHLSV HGRLRRSPEA VVSQACHRPS LLRCRAFKQE AGGDDEKPNE PRKRRKGPLY TLKAAMQGLA GSRSAAAEVY GGQYELAVEK AEEIFFSVAT
101: QVGRYVITMM SSGVVLAVGF QLSGGDSQTD ALIWYSWLGG VIIGTMLGAN SVLEEHCKAG PRNVVITGST RGLGKALARE FLLSGDHVVI ASRSPESVLQ
201: TINELEENIQ EGLSVAKKKQ RETLLQAKVV GTSCDVCKPE DVKKLVNFAV GELGSIDIWI NNAGTNKGFR PLVNFSDEDI TQIVSTNLVG SLLCTREAMD
301: VMQYQEKGGH VFNMDGAGSG GSSTPLTAVY GSTKCGLRQF QASLMKESRR SKVGVHTASP GMVLTDLLLS GSSLQNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAL VTAWVRRGRW FDEEGRAVYG

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.