Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47326 | Canola | cytosol, mitochondrion | 90.32 | 91.06 |
| CDY67729 | Canola | cytosol | 56.45 | 89.74 |
| CDY01120 | Canola | cytosol, mitochondrion | 92.34 | 89.28 |
| Bra034882.1-P | Field mustard | cytosol | 87.5 | 87.32 |
| Bra032697.1-P | Field mustard | cytosol, mitochondrion | 92.54 | 86.77 |
| GSMUA_Achr7P10870_001 | Banana | mitochondrion | 65.73 | 72.77 |
| KRH48384 | Soybean | plastid | 70.77 | 68.29 |
| VIT_11s0016g03890.t01 | Wine grape | plastid | 70.16 | 67.31 |
| KRH39291 | Soybean | plastid | 69.35 | 66.8 |
| PGSC0003DMT400077668 | Potato | cytosol | 64.31 | 65.64 |
| Solyc07g024000.2.1 | Tomato | plastid | 63.31 | 64.88 |
| HORVU3Hr1G030890.1 | Barley | plastid | 65.32 | 64.8 |
| TraesCS3D01G159800.1 | Wheat | mitochondrion | 65.12 | 64.73 |
| TraesCS3B01G179100.1 | Wheat | mitochondrion | 65.12 | 64.47 |
| EES02213 | Sorghum | plastid | 66.13 | 64.06 |
| Os01t0227100-01 | Rice | mitochondrion | 64.52 | 63.49 |
| TraesCS3A01G151900.1 | Wheat | mitochondrion | 56.05 | 63.18 |
| Zm00001d039312_P001 | Maize | plastid | 64.92 | 63.01 |
| GSMUA_Achr10P... | Banana | cytosol | 66.13 | 61.65 |
| KXG33129 | Sorghum | cytosol | 6.45 | 44.44 |
| OQU77869 | Sorghum | mitochondrion | 6.65 | 42.31 |
| AT5G04900.1 | Thale cress | plastid | 23.79 | 33.91 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:7.12.6.6.4.1 | EntrezGene:826942 | UniProt:A0A178UYX7 | EMBL:AB255028 | ProteinID:AEE83251.1 |
| ArrayExpress:AT4G13250 | EnsemblPlantsGene:AT4G13250 | RefSeq:AT4G13250 | TAIR:AT4G13250 | RefSeq:AT4G13250-TAIR-G | EnsemblPlants:AT4G13250.1 |
| TAIR:AT4G13250.1 | EMBL:AY057697 | Unigene:At.3267 | ProteinID:CAB41935.1 | ProteinID:CAB78367.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009507 |
| GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0010304 | GO:GO:0015996 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0019538 | GO:GO:0034256 | GO:GO:0055114 |
| InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_567400.1 | Symbol:NYC1 | ProteinID:OAO97881.1 | PFAM:PF00106 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00081 |
| PANTHER:PTHR24314 | PANTHER:PTHR24314:SF19 | UniProt:Q93ZA0 | InterPro:SDR_fam | SUPFAM:SSF51735 | TMHMM:TMhelix |
| UniParc:UPI00000AB48B | SEG:seg | : | : | : | : |
Description
NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
Coordinates
chr4:-:7684234..7687006
Molecular Weight (calculated)
54848.4 Da
IEP (calculated)
9.921
GRAVY (calculated)
-0.122
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.