CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80928	plastid
CDY11316	plastid
CDY43444	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	CDX80928	AT5G04900.1	22366162
AT4G13250.1	CDY11316	AT5G04900.1	22366162
AT4G13250.1	CDY43444	AT5G04900.1	22366162
AT4G13250.1	CDX80928	AT5G04900.1	22366162
AT4G13250.1	CDY11316	AT5G04900.1	22366162
AT4G13250.1	CDY43444	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47326	Canola	cytosol, mitochondrion	93.76	97.76
Bra032697.1-P	Field mustard	cytosol, mitochondrion	99.81	96.79
AT4G13250.1	Thale cress	cytosol	89.28	92.34
CDY67729	Canola	cytosol	54.97	90.38
GSMUA_Achr7P10870_001	Banana	mitochondrion	63.35	72.54
KRH48384	Soybean	plastid	69.2	69.07
KRH39291	Soybean	plastid	68.03	67.77
VIT_11s0016g03890.t01	Wine grape	plastid	67.64	67.12
PGSC0003DMT400077668	Potato	cytosol	62.77	66.26
Solyc07g024000.2.1	Tomato	plastid	61.79	65.5
HORVU3Hr1G030890.1	Barley	plastid	63.74	65.4
TraesCS3D01G159800.1	Wheat	mitochondrion	63.55	65.33
TraesCS3B01G179100.1	Wheat	mitochondrion	63.35	64.87
Os01t0227100-01	Rice	mitochondrion	63.35	64.48
EES02213	Sorghum	plastid	64.13	64.26
TraesCS3A01G151900.1	Wheat	mitochondrion	54.39	63.41
Zm00001d039312_P001	Maize	plastid	62.96	63.21
GSMUA_Achr10P...	Banana	cytosol	64.52	62.22
KXG33129	Sorghum	cytosol	5.85	41.67
OQU77869	Sorghum	mitochondrion	6.04	39.74
CDY11316	Canola	plastid	22.81	33.52
CDY43444	Canola	plastid	17.35	33.46
CDX80928	Canola	plastid	22.42	33.14

Protein Annotations

EnsemblPlants:CDY01120	EnsemblPlantsGene:GSBRNA2T00111179001	Gene3D:3.40.50.720	GO:A0A078EGD6	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
ncoils:Coil	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	PFAM:PF00106	PRINTS:PR00081	ProteinID:CDY01120
ProteinID:CDY01120.1	SEG:seg	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0004EF4D74	MapMan:7.12.6.6.4.1

Description

BnaA04g06990D

Coordinates

chrLK031924:-:136884..139740

Molecular Weight (calculated)

56774.8 Da

IEP (calculated)

9.989

GRAVY (calculated)

-0.140

Length

513 amino acids

Sequence
(BLAST)

001: MTTITKLQVY PRCLEHRLGF MDHQRVGSRL NCRYNRVHVH RCEGDSGEKK VERRRKREKL KGNGLWSSLK SGVLGVTKLG FLSKDEYNQK IEKLEMVFSS
101: IAVQIARYIV TMTSTGAILL IGFQLSGGDS SMNSLVWYSW LGGVIIGTMT GANMVLEDHY RAGPRNVVIT GSTRGLGKAL AREFLLSGDR VIVTSRSSES
201: VDMTVKELEE NLKEIMSNAS ESARKKLADA KVVGIACDVC KPEDVEKLSN FAVKELGSIN IWINNAGTNK GFRPLLDFTE EDIRQARILH GPCSFNLWLI
301: VSTNLIGSIL CTRGAMEVMS RQNNGGHIFN MDGAGSGGSS TPLTAVYGST KCGLRQFHSS IVKESQKTKV GLHTASPGMV LTELLLSGSS IKNKQMFNII
401: CELPETVART LVPRMRVVKG SGKSVNYLTP PRILLAIVTS WLRRSRWFDD QGRALYAAEA DRLRNWAENR TRFSLTDAME MYTENTWVSV FSLSVVCAFI
501: ILSSTTPSSF PGT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.