Factsheet for VIT_11s0016g03890.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00590.t01	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	VIT_01s0010g00590.t01	AT5G04900.1	22366162
AT4G13250.1	VIT_01s0010g00590.t01	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P10870_001	Banana	mitochondrion	68.86	79.46
CDY67729	Canola	cytosol	46.23	76.6
KRH48384	Soybean	plastid	72.92	73.35
KRH39291	Soybean	plastid	72.73	73.01
GSMUA_Achr10P...	Banana	cytosol	72.92	70.86
PGSC0003DMT400077668	Potato	cytosol	66.34	70.58
Solyc07g024000.2.1	Tomato	plastid	65.76	70.25
AT4G13250.1	Thale cress	cytosol	67.31	70.16
HORVU3Hr1G030890.1	Barley	plastid	67.12	69.4
TraesCS3D01G159800.1	Wheat	mitochondrion	66.92	69.34
Bra034882.1-P	Field mustard	cytosol	66.34	69.01
TraesCS3B01G179100.1	Wheat	mitochondrion	66.73	68.86
Os01t0227100-01	Rice	mitochondrion	66.92	68.65
CDY47326	Canola	cytosol, mitochondrion	64.99	68.29
EES02213	Sorghum	plastid	67.31	67.97
CDY01120	Canola	cytosol, mitochondrion	67.12	67.64
TraesCS3A01G151900.1	Wheat	mitochondrion	57.25	67.27
Zm00001d039312_P001	Maize	plastid	66.34	67.12
Bra032697.1-P	Field mustard	cytosol, mitochondrion	67.31	65.78
KXG33129	Sorghum	cytosol	5.61	40.28
VIT_01s0010g00590.t01	Wine grape	plastid	23.4	35.07
OQU77869	Sorghum	mitochondrion	4.84	32.05

Protein Annotations

EntrezGene:100259397	wikigene:100259397	Gene3D:3.40.50.720	MapMan:7.12.6.6.4.1	ProteinID:CBI28069	ProteinID:CBI28069.3
UniProt:D7TBN4	EMBL:FN595756	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009536
GO:GO:0009987	GO:GO:0010304	GO:GO:0015996	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0019538	GO:GO:0034256	GO:GO:0055114	EntrezGene:LOC100259397	wikigene:LOC100259397	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	InterPro:SDR_fam	SUPFAM:SSF51735
TIGR:TC56360	TMHMM:TMhelix	UniParc:UPI00015C8427	ArrayExpress:VIT_11s0016g03890	EnsemblPlantsGene:VIT_11s0016g03890	EnsemblPlants:VIT_11s0016g03890.t01
unigene:Vvi.402	RefSeq:XP_002280953	RefSeq:XP_002280953.1	:	:	:

Description

No Description!

Coordinates

chr11:-:3174051..3179257

Molecular Weight (calculated)

56554.3 Da

IEP (calculated)

9.676

GRAVY (calculated)

-0.078

Length

517 amino acids

Sequence
(BLAST)

001: MAAVTKLQIS PYSLHPRTHH RAARWPLRRP QFVSFRGRRG VYLLPCRSFR SGDGGELEEQ EKESVRKGGN LKENRVEGKE GSGILSFAKS VFVRVSGSFP
101: RTEEEHRIAV AKLEEIFSSI AVQIGRYIVT MMSTGVILAI GFQLSGGDSQ MNALIWYSWL GGIIIGTMIG ANLVLEEHCR AGPRNVVITG STRGLGKALA
201: REFLLSGDRV VVASRSPESV HATVRELEEN LKEGMVTAGG PSKTNLERAK VVGIACDVCE PDDVQKLANF AVSEFGSINI WINNAGTNKG FRPLLQFTDE
301: DIKQIVSTNL VGSLLCTQEA IRVMRSQGNG GHIFNMDGAG SGGSSTPLTA VYGSTKCGLR QLQGSLLKEC KRSNVGVHTA SPGMVLTDLL LSGSTIQNKQ
401: MFNIICELPE TVARTLVPRM RVVKGTGKAI NYLTPPRILL ALITVWLRQG RWFDEQGRAL YAAEADRIRN WAENRTRFSF TDAMEMYTEN TWVSVFSLSV
501: VCAFIILSST GSSFPGT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.