Factsheet for PGSC0003DMT400077668

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400033934	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	PGSC0003DMT400033934	AT5G04900.1	22366162
AT4G13250.1	PGSC0003DMT400033934	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g024000.2.1	Tomato	plastid	94.24	94.63
CDY67729	Canola	cytosol	46.5	72.44
GSMUA_Achr7P10870_001	Banana	mitochondrion	66.05	71.65
VIT_11s0016g03890.t01	Wine grape	plastid	70.58	66.34
KRH48384	Soybean	plastid	70.16	66.34
KRH39291	Soybean	plastid	68.93	65.05
Os01t0227100-01	Rice	mitochondrion	67.28	64.88
TraesCS3D01G159800.1	Wheat	mitochondrion	66.05	64.33
AT4G13250.1	Thale cress	cytosol	65.64	64.31
EES02213	Sorghum	plastid	67.7	64.26
TraesCS3B01G179100.1	Wheat	mitochondrion	65.84	63.87
HORVU3Hr1G030890.1	Barley	plastid	65.64	63.8
CDY47326	Canola	cytosol, mitochondrion	64.2	63.41
Zm00001d039312_P001	Maize	plastid	66.46	63.21
CDY01120	Canola	cytosol, mitochondrion	66.26	62.77
GSMUA_Achr10P...	Banana	cytosol	68.52	62.59
Bra034882.1-P	Field mustard	cytosol	63.79	62.37
TraesCS3A01G151900.1	Wheat	mitochondrion	56.38	62.27
Bra032697.1-P	Field mustard	cytosol, mitochondrion	66.26	60.87
KXG33129	Sorghum	cytosol	6.17	41.67
OQU77869	Sorghum	mitochondrion	6.17	38.46
PGSC0003DMT400033934	Potato	plastid	5.35	23.01

Protein Annotations

EntrezGene:102601206	Gene3D:3.40.50.720	MapMan:7.12.6.6.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009536	GO:GO:0009987	GO:GO:0010304	GO:GO:0015996	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0019538	GO:GO:0055114	UniProt:M1CYR0	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00106	EnsemblPlantsGene:PGSC0003DMG400030219	PGSC:PGSC0003DMG400030219	EnsemblPlants:PGSC0003DMT400077668	PRINTS:PR00081	PANTHER:PTHR24314
PANTHER:PTHR24314:SF19	InterPro:SDR_fam	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI000294E611	RefSeq:XP_006360473.1
SEG:seg	:	:	:	:	:

Description

Chlorophyll b reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400030219]

Coordinates

chr7:+:24708645..24714038

Molecular Weight (calculated)

53314.9 Da

IEP (calculated)

9.629

GRAVY (calculated)

0.037

Length

486 amino acids

Sequence
(BLAST)

001: MDMVAKVHVS TLDCHRLLPT GNVFRPLIGR RRVVVQPCRS FKSEDVGPAE YVKVNKFVGA IRSAVWSCSK PSLRTENKLR EAMEMLEERL FSLALYVGRY
101: IITMMSTGVV MFVGFQLSGG DSQMNELIWY SWLGGIIIGT MIGSNLVLDE VARAGPRNVL ITGSTRGLGK ALAREFLLSG DRVIVTSRSP VSVGLTIEEL
201: EENLKQALNA ATGSARKKLA HAKVVGIACD VSDPVDVKKL GKFAADELGY IDIWVNNAGT NKGFRPLLEF TNNDIQEIVS TNLIGSILCT KEAIQIMETQ
301: NKGGHVFNMD GAGSGGSSTP LTAVYGSTKC GLRQLQSSLL KECKRSKVGV HTASPGMVLT DLLLSGSTIQ NRQMFNIICE HPETVARTLV PRMRVVKGSG
401: RAINYLTPPR ILIALVTAWL RRGRWFDDQG RALYAAEADR LRNWAESRTR FSFTDAMEMY TENTWVSVFS LSVVCAFIIL SSTGST

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.