CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03835	Canola	plastid	100.0	100.0
CDY15020	Canola	plastid	97.44	98.16
CDY12903	Canola	plastid	96.7	97.42
CDY57375	Canola	plastid	96.34	97.05
CDY26347	Canola	plastid	87.55	93.73
AT1G61520.1	Thale cress	plastid	93.41	93.41
Solyc10g007690.2.1	Tomato	plastid	86.08	86.08
PGSC0003DMT400054836	Potato	plastid	85.71	85.71
PGSC0003DMT400020100	Potato	plastid	85.71	85.71
VIT_15s0024g00040.t01	Wine grape	plastid	84.98	84.67
Solyc12g011280.1.1	Tomato	plastid	84.25	84.25
KRH74072	Soybean	mitochondrion, nucleus, plastid	83.52	82.61
KRH14048	Soybean	nucleus, plastid	83.15	82.25
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	28.57	82.11
Zm00001d046786_P001	Maize	plastid	80.22	82.02
KXG20345	Sorghum	plastid	79.12	81.51
Os02t0197600-01	Rice	plastid	76.19	77.32
TraesCS6B01G191500.1	Wheat	plastid	75.82	76.95
TraesCS6D01G152700.1	Wheat	golgi	75.82	76.95
TraesCS6A01G159800.1	Wheat	plastid	75.82	76.95
CDY66572	Canola	cytosol, extracellular, plastid	21.61	41.26
CDY43936	Canola	plastid	38.46	41.02
CDX89120	Canola	plastid	38.1	40.62
CDY51572	Canola	plastid	38.1	40.15
CDX99044	Canola	plastid	37.0	40.08
CDY47410	Canola	plastid	37.0	40.08
CDY30369	Canola	plastid	20.88	37.5
CDX96677	Canola	plastid	35.9	36.84
CDX83783	Canola	plastid	35.9	36.84
CDY43213	Canola	mitochondrion, plastid	34.43	36.43
CDY17055	Canola	mitochondrion, plastid	34.43	36.43
CDY18320	Canola	plastid	30.77	35.9
CDY14320	Canola	plastid	30.77	35.9
CDX67613	Canola	plastid	30.77	34.85
CDX73435	Canola	plastid	30.77	34.85
CDX78277	Canola	plastid	30.77	34.85
CDY07517	Canola	plastid	30.77	34.85
CDY52238	Canola	plastid	29.67	34.62
CDY17250	Canola	mitochondrion, plastid	20.51	34.36
CDY17247	Canola	plastid	32.23	33.08
CDX79562	Canola	plastid	32.23	33.08
CDX84316	Canola	plastid	32.23	33.08
CDX84647	Canola	plastid	32.23	33.08
CDX98158	Canola	plastid	32.23	32.96
CDY66768	Canola	plastid	32.23	32.96
CDY43676	Canola	plastid	32.23	32.96
CDY43198	Canola	plastid	32.23	32.96
CDY17248	Canola	plastid	31.87	32.71
CDY35271	Canola	plastid	31.87	32.58
CDX90218	Canola	plastid	31.87	32.58
CDX90755	Canola	plastid	33.33	32.5
CDY05098	Canola	plastid	33.33	32.5
CDY15050	Canola	plastid	31.5	32.45
CDY26306	Canola	plastid	31.5	32.21
CDX99866	Canola	plastid	31.5	32.21
CDX93077	Canola	plastid	31.14	32.08
CDY20039	Canola	plastid	31.14	32.08
CDY60092	Canola	plastid	32.97	32.03
CDX83726	Canola	plastid	31.14	31.95
CDY49770	Canola	plastid	31.14	31.95
CDY03989	Canola	plastid	31.14	31.95
CDY00149	Canola	plastid	31.14	31.95
CDY13732	Canola	plastid	30.77	31.58
CDX83967	Canola	extracellular, vacuole	2.56	30.43
CDY33376	Canola	plastid	28.57	30.23
CDX81735	Canola	plastid	28.57	30.12
CDY35042	Canola	plastid	28.21	29.84
CDY52865	Canola	plastid	28.21	29.73
CDX96833	Canola	plastid	27.84	29.34
CDY28778	Canola	plastid	27.11	28.91
CDY44667	Canola	plastid	30.4	28.82
CDY53084	Canola	plastid	30.4	28.72
CDY04834	Canola	plastid	30.04	28.57
CDY20518	Canola	plastid	27.84	27.54
CDX74808	Canola	plastid	27.11	26.81
CDX84315	Canola	plastid	32.23	26.75
CDX86864	Canola	plastid	20.15	26.32
CDX83966	Canola	plastid	21.98	26.32
CDY45980	Canola	plastid	30.77	25.93
CDY20401	Canola	plastid	30.77	25.69
CDY61708	Canola	plastid	21.98	17.14

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	GO:A0A078ICK1	UniProt:A0A078ICK1	EnsemblPlants:CDY47581	ProteinID:CDY47581
ProteinID:CDY47581.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00087676001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF14	SUPFAM:SSF103511	UniParc:UPI0004EED8EE	SEG:seg

Description

BnaA01g22670DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078ICK1]

Coordinates

chrLK032723:+:57722..58956

Molecular Weight (calculated)

29198.1 Da

IEP (calculated)

8.681

GRAVY (calculated)

0.009

Length

273 amino acids

Sequence
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGAKPAVSV SQRKVSLVVK AASTPPAKQG ANRQLWFASS QSLSYLDGSL PGDFGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPADT ALPWFQTGVI PPAGTYSYWA DPYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GFAGSGDPAY
201: PGGPFFNPLG FGKDEKSMKE LKLKEVKNGR LAMLAILGYF VQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.