CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12903	Canola	plastid	99.63	99.63
Bra027083.1-P	Field mustard	plastid	98.89	98.89
CDY15020	Canola	plastid	97.79	97.79
CDY47581	Canola	plastid	97.05	96.34
CDY03835	Canola	plastid	97.05	96.34
AT1G61520.1	Thale cress	plastid	94.1	93.41
CDY26347	Canola	plastid	87.82	93.33
PGSC0003DMT400020100	Potato	plastid	86.35	85.71
VIT_15s0024g00040.t01	Wine grape	plastid	86.35	85.4
Solyc10g007690.2.1	Tomato	plastid	85.98	85.35
Solyc12g011280.1.1	Tomato	plastid	85.61	84.98
PGSC0003DMT400054836	Potato	plastid	85.61	84.98
KRH74072	Soybean	mitochondrion, nucleus, plastid	84.87	83.33
KRH14048	Soybean	nucleus, plastid	84.5	82.97
Zm00001d046786_P001	Maize	plastid	80.44	81.65
KXG20345	Sorghum	plastid	79.34	81.13
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	28.41	81.05
Os02t0197600-01	Rice	plastid	74.91	75.46
TraesCS6D01G152700.1	Wheat	golgi	74.54	75.09
TraesCS6B01G191500.1	Wheat	plastid	74.54	75.09
TraesCS6A01G159800.1	Wheat	plastid	74.54	75.09
CDY66572	Canola	cytosol, extracellular, plastid	21.77	41.26
CDY43936	Canola	plastid	38.75	41.02
CDX89120	Canola	plastid	38.38	40.62
CDY51572	Canola	plastid	38.38	40.15
CDY47410	Canola	plastid	37.27	40.08
CDX99044	Canola	plastid	37.27	40.08
CDY30369	Canola	plastid	21.03	37.5
CDX83783	Canola	plastid	35.79	36.47
CDX96677	Canola	plastid	35.79	36.47
CDY43213	Canola	mitochondrion, plastid	34.69	36.43
CDY17055	Canola	mitochondrion, plastid	34.69	36.43
CDY14320	Canola	plastid	31.37	36.32
CDY18320	Canola	plastid	31.37	36.32
CDY52238	Canola	plastid	30.26	35.04
CDX67613	Canola	plastid	30.63	34.44
CDX78277	Canola	plastid	30.63	34.44
CDX73435	Canola	plastid	30.63	34.44
CDY07517	Canola	plastid	30.63	34.44
CDY17250	Canola	mitochondrion, plastid	20.66	34.36
CDY17247	Canola	plastid	33.21	33.83
CDX84316	Canola	plastid	33.21	33.83
CDX84647	Canola	plastid	33.21	33.83
CDX79562	Canola	plastid	33.21	33.83
CDY17248	Canola	plastid	32.84	33.46
CDX98158	Canola	plastid	32.84	33.33
CDY43198	Canola	plastid	32.84	33.33
CDY43676	Canola	plastid	32.84	33.33
CDY66768	Canola	plastid	32.84	33.33
CDY35271	Canola	plastid	32.47	32.96
CDX90218	Canola	plastid	32.47	32.96
CDY15050	Canola	plastid	32.1	32.83
CDY26306	Canola	plastid	32.1	32.58
CDX99866	Canola	plastid	32.1	32.58
CDX90755	Canola	plastid	33.58	32.5
CDY05098	Canola	plastid	33.58	32.5
CDX93077	Canola	plastid	31.73	32.45
CDY20039	Canola	plastid	31.37	32.08
CDY60092	Canola	plastid	33.21	32.03
CDY49770	Canola	plastid	31.37	31.95
CDY00149	Canola	plastid	31.37	31.95
CDX83726	Canola	plastid	31.37	31.95
CDY03989	Canola	plastid	31.37	31.95
CDY13732	Canola	plastid	31.0	31.58
CDX83967	Canola	extracellular, vacuole	2.58	30.43
CDY28778	Canola	plastid	28.04	29.69
CDY04834	Canola	plastid	31.37	29.62
CDY44667	Canola	plastid	31.37	29.51
CDY53084	Canola	plastid	31.37	29.41
CDY33376	Canola	plastid	27.68	29.07
CDX81735	Canola	plastid	27.68	28.96
CDY35042	Canola	plastid	27.31	28.68
CDY52865	Canola	plastid	27.31	28.57
CDX96833	Canola	plastid	26.94	28.19
CDY20518	Canola	plastid	28.04	27.54
CDX84315	Canola	plastid	32.84	27.05
CDX74808	Canola	plastid	27.31	26.81
CDX86864	Canola	plastid	20.3	26.32
CDY45980	Canola	plastid	30.63	25.62
CDY20401	Canola	plastid	30.63	25.38
CDX83966	Canola	plastid	21.03	25.0
CDY61708	Canola	plastid	22.14	17.14

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	GO:A0A078J4F3	UniProt:A0A078J4F3	EnsemblPlants:CDY57375	ProteinID:CDY57375
ProteinID:CDY57375.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00020922001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF14	SUPFAM:SSF103511	UniParc:UPI0004EBE6DA	SEG:seg

Description

BnaCnng31870DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078J4F3]

Coordinates

chrLK033570:-:20604..22018

Molecular Weight (calculated)

29092.0 Da

IEP (calculated)

8.660

GRAVY (calculated)

-0.014

Length

271 amino acids

Sequence
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGTKPAVSV RKTSFVIKAA STPPVKQGAN RPLWFASSQS LSYLDGSLPG DYGFDPLGLS DPEGTGGFIE PRWLAYGEII
101: NGRFAMLGAA GAIAPEILGK AGLIPADTAL PWFQTGVIPP AGTYSYWADP YTLFVLEMAL MGFAEHRRLQ DWYNPGSMGK QYFLGLEKGF AGSGDPSYPG
201: GPFFNPLGFG KDEKSMKELK LKEVKNGRLA MLAILGYFVQ GLVTGVGPYQ NLLDHLADPV NNNVLTSLKF H

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.