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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007109.1-P Field mustard plastid 99.17 99.17
CDY07517 Canola plastid 98.76 98.76
CDX67613 Canola plastid 98.76 98.76
CDX73435 Canola plastid 98.34 98.34
AT3G54890.1 Thale cress plastid 97.1 97.1
GSMUA_Achr6P31940_001 Banana plastid 84.23 84.23
GSMUA_Achr2P06350_001 Banana unclear 83.82 83.82
PGSC0003DMT400060313 Potato plastid 85.48 83.74
Solyc05g056070.2.1 Tomato plastid 85.06 83.33
VIT_13s0019g04140.t01 Wine grape plastid 84.23 83.2
Solyc05g056050.2.1 Tomato plastid 84.65 82.93
PGSC0003DMT400059995 Potato plastid 84.65 82.93
KRH08384 Soybean nucleus, plastid 83.4 81.71
KRH70044 Soybean mitochondrion, nucleus, plastid 82.99 81.3
Os06t0320500-01 Rice plastid 75.1 75.1
TraesCS7B01G192500.1 Wheat plastid 76.35 75.1
TraesCS7D01G227300.1 Wheat plastid 76.35 75.1
EES04597 Sorghum plastid 76.35 75.1
Zm00001d015385_P001 Maize plastid 75.93 74.69
TraesCS7A01G227100.1 Wheat plastid 76.35 74.49
HORVU7Hr1G046320.2 Barley plastid 75.52 63.86
Zm00001d024372_P001 Maize plastid 45.23 45.99
CDY30369 Canola plastid 25.73 40.79
CDY43936 Canola plastid 39.42 37.11
CDY66572 Canola cytosol, extracellular, plastid 21.99 37.06
CDX89120 Canola plastid 39.0 36.72
CDX99866 Canola plastid 40.66 36.7
CDY66768 Canola plastid 40.66 36.7
CDY43676 Canola plastid 40.66 36.7
CDY26306 Canola plastid 40.66 36.7
CDY51572 Canola plastid 39.42 36.68
CDY35271 Canola plastid 40.25 36.33
CDX90218 Canola plastid 40.25 36.33
CDY17250 Canola mitochondrion, plastid 24.48 36.2
CDX84647 Canola plastid 39.83 36.09
CDX79562 Canola plastid 39.83 36.09
CDX84316 Canola plastid 39.83 36.09
CDY17247 Canola plastid 39.83 36.09
CDY43198 Canola plastid 39.83 35.96
CDX98158 Canola plastid 39.83 35.96
CDY44667 Canola plastid 42.74 35.76
CDX99044 Canola plastid 37.34 35.71
CDY47410 Canola plastid 37.34 35.71
CDY17248 Canola plastid 39.42 35.71
CDY53084 Canola plastid 42.74 35.64
CDY04834 Canola plastid 41.08 34.49
CDX83783 Canola plastid 37.34 33.83
CDX96677 Canola plastid 37.34 33.83
CDY52238 Canola plastid 32.37 33.33
CDX74808 Canola plastid 37.76 32.97
CDY14320 Canola plastid 31.95 32.91
CDY20518 Canola plastid 37.34 32.61
CDY18320 Canola plastid 31.54 32.48
CDY15050 Canola plastid 35.68 32.45
CDY33376 Canola plastid 34.44 32.17
CDY43213 Canola mitochondrion, plastid 34.44 32.17
CDX93077 Canola plastid 35.27 32.08
CDY35042 Canola plastid 34.02 31.78
CDY17055 Canola mitochondrion, plastid 34.02 31.78
CDY20039 Canola plastid 34.85 31.7
CDX96833 Canola plastid 34.02 31.66
CDY49770 Canola plastid 34.85 31.58
CDX83966 Canola plastid 29.88 31.58
CDX83726 Canola plastid 34.85 31.58
CDY00149 Canola plastid 34.85 31.58
CDY26347 Canola plastid 33.2 31.37
CDY13732 Canola plastid 34.44 31.2
CDY03989 Canola plastid 34.44 31.2
CDX81735 Canola plastid 33.2 30.89
CDY52865 Canola plastid 33.2 30.89
CDY03835 Canola plastid 34.85 30.77
CDY47581 Canola plastid 34.85 30.77
CDY12903 Canola plastid 34.44 30.63
CDY15020 Canola plastid 34.44 30.63
CDY57375 Canola plastid 34.44 30.63
CDX83967 Canola extracellular, vacuole 2.9 30.43
CDX90755 Canola plastid 34.02 29.29
CDY05098 Canola plastid 34.02 29.29
CDX84315 Canola plastid 39.42 28.88
CDY60092 Canola plastid 33.61 28.83
CDY28778 Canola plastid 29.46 27.73
CDY45980 Canola plastid 36.51 27.16
CDY20401 Canola plastid 36.51 26.91
CDX86864 Canola plastid 19.5 22.49
CDY61708 Canola plastid 30.29 20.86
Protein Annotations
MapMan:1.1.4.1.1Gene3D:1.10.3460.10GO:A0A078CNC7EnsemblPlants:CDX78277ProteinID:CDX78277ProteinID:CDX78277.1
InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfGO:GO:0005575GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009765GO:GO:0009987GO:GO:0015979GO:GO:0016020EnsemblPlantsGene:GSBRNA2T00129620001
InterPro:IPR023329PFAM:PF00504PANTHER:PTHR21649PANTHER:PTHR21649:SF7SUPFAM:SSF103511UniParc:UPI0003E6E50B
SEG:seg:::::
Description
BnaA09g34720D
Coordinates
chrLK031814:-:2152823..2154589
Molecular Weight (calculated)
26073.5 Da
IEP (calculated)
6.675
GRAVY (calculated)
-0.083
Length
241 amino acids
Sequence
(BLAST)
001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VSLPNVGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPENL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA VPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKFEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH KNIGDIVIPL N
Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)
001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N
Arabidopsis Description
LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.