Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015385_P001 | Maize | plastid | 49.79 | 48.16 |
| EES04597 | Sorghum | plastid | 48.95 | 47.35 |
| VIT_13s0019g04140.t01 | Wine grape | plastid | 48.52 | 47.13 |
| Solyc05g056050.2.1 | Tomato | plastid | 48.52 | 46.75 |
| Os06t0320500-01 | Rice | plastid | 47.26 | 46.47 |
| GSMUA_Achr2P06350_001 | Banana | unclear | 47.26 | 46.47 |
| AT3G54890.1 | Thale cress | plastid | 46.84 | 46.06 |
| Solyc05g056070.2.1 | Tomato | plastid | 47.26 | 45.53 |
| PGSC0003DMT400059995 | Potato | plastid | 47.26 | 45.53 |
| CDX67613 | Canola | plastid | 45.99 | 45.23 |
| Bra003198.1-P | Field mustard | plastid | 45.99 | 45.23 |
| Bra007109.1-P | Field mustard | plastid | 45.99 | 45.23 |
| CDY07517 | Canola | plastid | 45.99 | 45.23 |
| CDX73435 | Canola | plastid | 45.99 | 45.23 |
| CDX78277 | Canola | plastid | 45.99 | 45.23 |
| PGSC0003DMT400060313 | Potato | plastid | 46.84 | 45.12 |
| KRH70044 | Soybean | mitochondrion, nucleus, plastid | 46.84 | 45.12 |
| KRH08384 | Soybean | nucleus, plastid | 46.84 | 45.12 |
| TraesCS7A01G227100.1 | Wheat | plastid | 45.99 | 44.13 |
| TraesCS7B01G192500.1 | Wheat | plastid | 45.57 | 44.08 |
| TraesCS7D01G227300.1 | Wheat | plastid | 45.57 | 44.08 |
| HORVU7Hr1G046320.2 | Barley | plastid | 45.99 | 38.25 |
| Zm00001d032197_P001 | Maize | plastid | 24.47 | 23.48 |
| Zm00001d050403_P001 | Maize | plastid | 24.05 | 23.36 |
| Zm00001d018157_P001 | Maize | plastid | 24.47 | 21.56 |
| Zm00001d006663_P001 | Maize | plastid | 23.63 | 21.54 |
| Zm00001d021906_P001 | Maize | plastid | 23.63 | 20.74 |
| Zm00001d006587_P001 | Maize | plastid | 24.89 | 20.27 |
| Zm00001d046786_P001 | Maize | plastid | 22.78 | 20.22 |
| Zm00001d021763_P001 | Maize | plastid | 24.47 | 19.93 |
| Zm00001d009589_P001 | Maize | plastid | 21.94 | 19.62 |
| Zm00001d044402_P001 | Maize | plastid | 21.52 | 19.32 |
| Zm00001d044401_P001 | Maize | plastid | 21.52 | 19.32 |
| Zm00001d044399_P001 | Maize | plastid | 21.52 | 19.32 |
| Zm00001d005814_P002 | Maize | plastid | 21.94 | 19.19 |
| Zm00001d044396_P001 | Maize | plastid | 21.1 | 18.94 |
| Zm00001d033132_P001 | Maize | plastid | 20.68 | 18.85 |
| Zm00001d033136_P001 | Maize | plastid | 20.68 | 18.85 |
| Zm00001d039040_P001 | Maize | plastid | 21.1 | 18.8 |
| Zm00001d011285_P001 | Maize | plastid | 20.68 | 18.56 |
| Zm00001d021435_P001 | Maize | plastid | 20.25 | 18.32 |
| Zm00001d021784_P001 | Maize | plastid | 20.25 | 17.84 |
| Zm00001d007267_P002 | Maize | plastid | 20.25 | 16.96 |
| Zm00001d020002_P002 | Maize | plastid | 22.36 | 16.83 |
| Zm00001d048998_P001 | Maize | plastid | 19.83 | 16.61 |
| Zm00001d001857_P001 | Maize | plastid | 17.3 | 16.21 |
| Zm00001d026599_P001 | Maize | plastid | 16.46 | 15.73 |
| Zm00001d032051_P001 | Maize | mitochondrion | 5.49 | 14.44 |
| Zm00001d040012_P001 | Maize | plastid | 7.17 | 12.5 |
| Zm00001d011218_P001 | Maize | plastid | 8.02 | 11.59 |
| Zm00001d006592_P001 | Maize | plastid | 4.64 | 8.94 |
| Zm00001d013766_P001 | Maize | plastid | 3.8 | 6.25 |
Protein Annotations
| Gene3D:1.10.3460.10 | MapMan:35.1 | UniProt:A0A1D6IYZ0 | ProteinID:AQK41087.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind |
| InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
| GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 |
| GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 |
| GO:GO:0019538 | InterPro:IPR023329 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF7 | SUPFAM:SSF103511 |
| UniParc:UPI0008447174 | EnsemblPlantsGene:Zm00001d024372 | EnsemblPlants:Zm00001d024372_P001 | EnsemblPlants:Zm00001d024372_T001 | : | : |
Description
Chlorophyll a-b binding protein 6 chloroplastic
Coordinates
chr10:-:67598558..67599387
Molecular Weight (calculated)
25789.0 Da
IEP (calculated)
8.261
GRAVY (calculated)
-0.135
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHGSASTPT RDIVGSAPLI PTAPSHDRTW MPSPPDLAHA LVLTQPHRHH HASALYLPRQ SRIGARPSPA EVAYVQIPTI PSELLSSFVV SYQDALPIAP
101: RSRPLDPGDS CTGFYAGAGP AREVWAPALF FLKYGAPVPW GTLPTILAVE FVAIAFAEHQ RTMEKDPEKK NSKDTLKLQE YKLKEIKNGR LAMLAFVGFC
201: IQSAYPGTGP LENLAAHLAD PWHNNIGDII IPRSISP
101: RSRPLDPGDS CTGFYAGAGP AREVWAPALF FLKYGAPVPW GTLPTILAVE FVAIAFAEHQ RTMEKDPEKK NSKDTLKLQE YKLKEIKNGR LAMLAFVGFC
201: IQSAYPGTGP LENLAAHLAD PWHNNIGDII IPRSISP
001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N
Arabidopsis Description
LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.