Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G192500.1 | Wheat | plastid | 100.0 | 100.0 |
| TraesCS7A01G227100.1 | Wheat | plastid | 100.0 | 99.19 |
| EES04597 | Sorghum | plastid | 91.43 | 91.43 |
| Zm00001d015385_P001 | Maize | plastid | 91.02 | 91.02 |
| Os06t0320500-01 | Rice | plastid | 88.57 | 90.04 |
| HORVU7Hr1G046320.2 | Barley | plastid | 99.18 | 85.26 |
| Bra003198.1-P | Field mustard | plastid | 75.92 | 77.18 |
| CDX73435 | Canola | plastid | 75.92 | 77.18 |
| CDX67613 | Canola | plastid | 75.92 | 77.18 |
| CDY07517 | Canola | plastid | 75.51 | 76.76 |
| AT3G54890.1 | Thale cress | plastid | 75.51 | 76.76 |
| Bra007109.1-P | Field mustard | plastid | 75.51 | 76.76 |
| VIT_13s0019g04140.t01 | Wine grape | plastid | 76.33 | 76.64 |
| CDX78277 | Canola | plastid | 75.1 | 76.35 |
| GSMUA_Achr2P06350_001 | Banana | unclear | 74.69 | 75.93 |
| PGSC0003DMT400059995 | Potato | plastid | 74.29 | 73.98 |
| PGSC0003DMT400060313 | Potato | plastid | 73.88 | 73.58 |
| Solyc05g056050.2.1 | Tomato | plastid | 73.88 | 73.58 |
| Solyc05g056070.2.1 | Tomato | plastid | 73.47 | 73.17 |
| KRH08384 | Soybean | nucleus, plastid | 72.24 | 71.95 |
| KRH70044 | Soybean | mitochondrion, nucleus, plastid | 72.24 | 71.95 |
| Zm00001d024372_P001 | Maize | plastid | 44.08 | 45.57 |
| TraesCS5D01G238300.1 | Wheat | mitochondrion, plastid | 38.37 | 38.37 |
| TraesCS5D01G464900.1 | Wheat | plastid | 38.78 | 35.71 |
| TraesCS2D01G200700.1 | Wheat | plastid | 37.14 | 35.69 |
| TraesCS1D01G306200.1 | Wheat | plastid | 37.55 | 34.98 |
| TraesCS1D01G411300.1 | Wheat | plastid | 37.96 | 34.96 |
| TraesCS6D01G088600.1 | Wheat | plastid | 37.96 | 34.96 |
| TraesCS5D01G464700.1 | Wheat | plastid | 37.96 | 34.96 |
| TraesCS6D01G088700.1 | Wheat | plastid | 32.65 | 34.78 |
| TraesCS5D01G464800.1 | Wheat | plastid | 37.55 | 34.59 |
| TraesCS1D01G411600.1 | Wheat | plastid | 37.55 | 34.59 |
| TraesCS6D01G088800.1 | Wheat | plastid | 37.55 | 34.59 |
| TraesCS1D01G374900.1 | Wheat | plastid | 37.14 | 34.34 |
| TraesCS1D01G375100.1 | Wheat | plastid | 37.14 | 34.34 |
| TraesCS2D01G209900.1 | Wheat | plastid | 40.0 | 34.27 |
| TraesCS5D01G357600.1 | Wheat | plastid | 36.73 | 33.96 |
| TraesCS7D01G199400.1 | Wheat | plastid | 36.73 | 33.83 |
| TraesCS7D01G276300.1 | Wheat | plastid | 35.92 | 33.72 |
| TraesCS6D01G299200.1 | Wheat | plastid | 34.29 | 33.07 |
| TraesCS1D01G375000.1 | Wheat | plastid | 32.24 | 33.05 |
| TraesCS6D01G152700.1 | Wheat | golgi | 35.92 | 32.71 |
| TraesCS7D01G199500.1 | Wheat | plastid | 35.51 | 32.71 |
| TraesCS1D01G428200.1 | Wheat | plastid | 35.1 | 32.09 |
| TraesCS5D01G329200.1 | Wheat | plastid | 33.88 | 31.56 |
| TraesCS5D01G182000.1 | Wheat | plastid | 39.18 | 30.97 |
| TraesCS5D01G219100.1 | Wheat | plastid | 34.69 | 30.91 |
| TraesCS2D01G320900.1 | Wheat | plastid | 28.16 | 27.06 |
| TraesCS4D01G086400.1 | Wheat | plastid | 31.02 | 26.57 |
| TraesCS1D01G375200.1 | Wheat | plastid | 16.33 | 25.97 |
Protein Annotations
| MapMan:1.1.4.1.1 | Gene3D:1.10.3460.10 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009409 | GO:GO:0009507 |
| GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009637 |
| GO:GO:0009644 | GO:GO:0009645 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0010114 | GO:GO:0010218 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0019904 |
| InterPro:IPR023329 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF7 | SUPFAM:SSF103511 | EnsemblPlantsGene:TraesCS7D01G227300 |
| EnsemblPlants:TraesCS7D01G227300.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:187197235..187198208
Molecular Weight (calculated)
26465.6 Da
IEP (calculated)
6.119
GRAVY (calculated)
-0.150
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSGLRSC SAVGVPSLLA PSSRSGRSGL PFCAYATTSG RVTMSAEWFP GQPRPAHLDG SSPGDFGFDP LGLATVPENF ERFKESEIYH CRWAMLCVPG
101: VLVPEALGLG NWVKAQEWAA LPDGQATYLG NPVPWGNLPT ILAIEFLAIA FAEQQRTMEK DPEKKKYPGG AFDPLGFSKD PAKFEELKLK EIKNGRLAML
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPR NIYGP
101: VLVPEALGLG NWVKAQEWAA LPDGQATYLG NPVPWGNLPT ILAIEFLAIA FAEQQRTMEK DPEKKKYPGG AFDPLGFSKD PAKFEELKLK EIKNGRLAML
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPR NIYGP
001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N
Arabidopsis Description
LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.