CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08384	Soybean	nucleus, plastid	97.97	97.97
GSMUA_Achr6P31940_001	Banana	plastid	86.18	87.97
GSMUA_Achr2P06350_001	Banana	unclear	84.15	85.89
Solyc05g056050.2.1	Tomato	plastid	84.96	84.96
Solyc05g056070.2.1	Tomato	plastid	84.55	84.55
PGSC0003DMT400060313	Potato	plastid	84.15	84.15
VIT_13s0019g04140.t01	Wine grape	plastid	83.33	84.02
PGSC0003DMT400059995	Potato	plastid	83.74	83.74
Bra003198.1-P	Field mustard	plastid	81.71	83.4
CDX67613	Canola	plastid	81.71	83.4
CDY07517	Canola	plastid	81.71	83.4
Bra007109.1-P	Field mustard	plastid	81.3	82.99
CDX73435	Canola	plastid	81.3	82.99
CDX78277	Canola	plastid	81.3	82.99
AT3G54890.1	Thale cress	plastid	80.89	82.57
Os06t0320500-01	Rice	plastid	74.39	75.93
Zm00001d015385_P001	Maize	plastid	75.2	75.51
EES04597	Sorghum	plastid	75.2	75.51
TraesCS7D01G227300.1	Wheat	plastid	71.95	72.24
TraesCS7B01G192500.1	Wheat	plastid	71.95	72.24
TraesCS7A01G227100.1	Wheat	plastid	71.95	71.66
HORVU7Hr1G046320.2	Barley	plastid	71.14	61.4
Zm00001d024372_P001	Maize	plastid	45.12	46.84
KRH08634	Soybean	endoplasmic reticulum	21.95	43.55
KRH54568	Soybean	nucleus, plastid	39.02	38.1
KRH63318	Soybean	plastid	38.62	37.7
KRH12566	Soybean	plastid	38.21	36.15
KRH37524	Soybean	plastid	38.21	36.15
KRH08676	Soybean	nucleus, plastid	38.62	35.98
KRH08672	Soybean	mitochondrion, nucleus, plastid	38.62	35.98
KRH08669	Soybean	nucleus, plastid	38.62	35.98
KRH58441	Soybean	mitochondrion, plastid	38.21	35.74
KRH06319	Soybean	nucleus, plastid	39.02	35.56
KRH42317	Soybean	mitochondrion, nucleus, plastid	37.8	35.36
KRH70280	Soybean	plastid	34.15	33.73
KRH75874	Soybean	mitochondrion, nucleus, plastid	39.02	33.1
KRH65776	Soybean	nucleus, plastid	39.02	33.1
KRH47742	Soybean	nucleus	37.4	32.62
KRH22164	Soybean	nucleus, plastid	35.37	32.58
KRH27171	Soybean	mitochondrion, nucleus, plastid	35.37	32.46
KRH74072	Soybean	mitochondrion, nucleus, plastid	36.18	32.25
KRH14048	Soybean	nucleus, plastid	36.18	32.25
KRH14122	Soybean	nucleus, plastid	34.15	31.7
KRH74003	Soybean	nucleus, plastid	34.15	31.7
KRH68993	Soybean	plastid	38.21	30.52
KRG97750	Soybean	plastid	34.15	30.22
KRH58296	Soybean	plastid	28.86	29.22
KRH51989	Soybean	nucleus	33.74	29.12
KRH31130	Soybean	nucleus, plastid	33.33	29.08
KRG92462	Soybean	nucleus, plastid	33.74	28.82
KRH42185	Soybean	mitochondrion, nucleus, plastid	30.08	28.68
KRH34336	Soybean	plastid	33.33	28.57
KRH09238	Soybean	mitochondrion, nucleus, plastid	33.33	28.37
KRH43915	Soybean	mitochondrion, nucleus, plastid	30.08	28.35
KRH38736	Soybean	nucleus, plastid	33.33	28.18
KRH10515	Soybean	mitochondrion, nucleus, plastid	29.67	28.08
KRH06016	Soybean	plastid	36.59	27.11
KRH17548	Soybean	cytosol, peroxisome, plastid	21.95	26.73
KRH61286	Soybean	mitochondrion	18.7	21.0
KRH58809	Soybean	mitochondrion	22.76	17.67

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	EMBL:ACUP02000745	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
EnsemblPlantsGene:GLYMA_02G064700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0031409	UniProt:I1JCY0	InterPro:IPR023329	EnsemblPlants:KRH70044	ProteinID:KRH70044	ProteinID:KRH70044.1
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF7	SUPFAM:SSF103511	UniParc:UPI00023BE497	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:5781636..5784296

Molecular Weight (calculated)

26683.0 Da

IEP (calculated)

6.678

GRAVY (calculated)

-0.089

Length

246 amino acids

Sequence
(BLAST)

001: MAANTLMSTA ISAFPSLLSS SKSRFATAVP LSSFGVTNAS SSRFSMSADW MPGQPRPPYL DGSAPGDFGF DPLRLGEVPE NLERFKESEL IHCRWAMLAV
101: PGILVPEALG LGNWVKAQEW AAVPGGQATY LGNPVPWGTL PTILAIEFLA ISFVEHQRSM EKDPEKKKYP GGAFDPLGYS KDPKTFHEYK VKELKNGRLA
201: LLAFVGFCVQ QSAYPGTGPL ENLAAHLADP WHNNIGNIII PQSILP

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.