Factsheet for GSMUA_Achr2P06350_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P31940_001	Banana	plastid	93.36	93.36
VIT_13s0019g04140.t01	Wine grape	plastid	85.48	84.43
KRH70044	Soybean	mitochondrion, nucleus, plastid	85.89	84.15
KRH08384	Soybean	nucleus, plastid	85.89	84.15
Bra003198.1-P	Field mustard	plastid	83.82	83.82
CDY07517	Canola	plastid	83.82	83.82
CDX73435	Canola	plastid	83.82	83.82
CDX78277	Canola	plastid	83.82	83.82
CDX67613	Canola	plastid	83.82	83.82
Bra007109.1-P	Field mustard	plastid	83.4	83.4
AT3G54890.1	Thale cress	plastid	82.99	82.99
PGSC0003DMT400060313	Potato	plastid	84.23	82.52
Solyc05g056070.2.1	Tomato	plastid	82.99	81.3
PGSC0003DMT400059995	Potato	plastid	82.99	81.3
Solyc05g056050.2.1	Tomato	plastid	82.57	80.89
EES04597	Sorghum	plastid	79.67	78.37
Zm00001d015385_P001	Maize	plastid	79.25	77.96
Os06t0320500-01	Rice	plastid	77.59	77.59
TraesCS7B01G192500.1	Wheat	plastid	75.93	74.69
TraesCS7D01G227300.1	Wheat	plastid	75.93	74.69
TraesCS7A01G227100.1	Wheat	plastid	75.93	74.09
HORVU7Hr1G046320.2	Barley	plastid	75.1	63.51
Zm00001d024372_P001	Maize	plastid	46.47	47.26
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	27.39	45.21
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	40.25	39.59
GSMUA_Achr2P14960_001	Banana	plastid	40.66	39.04
GSMUA_Achr9P02810_001	Banana	plastid	39.0	38.68
GSMUA_Achr6P20660_001	Banana	mitochondrion	32.37	38.05
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	20.33	36.84
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	20.33	36.84
GSMUA_Achr4P24090_001	Banana	unclear	38.17	36.51
GSMUA_Achr9P18200_001	Banana	plastid	19.92	35.04
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	36.93	33.33
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	33.61	32.53
GSMUA_Achr7P13020_001	Banana	plastid	36.51	32.35
GSMUA_Achr3P04110_001	Banana	plastid	36.1	31.75
GSMUA_Achr4P33040_001	Banana	plastid, unclear	34.44	31.44
GSMUA_AchrUn_...	Banana	plastid	28.63	29.87
GSMUA_Achr4P07890_001	Banana	plastid	19.5	29.56
GSMUA_Achr1P08770_001	Banana	plastid, unclear	28.63	28.63
GSMUA_Achr6P12670_001	Banana	plasma membrane	32.78	28.32
GSMUA_Achr9P27480_001	Banana	mitochondrion	36.93	27.64
GSMUA_Achr3P02780_001	Banana	plastid	33.2	27.59
GSMUA_Achr10P...	Banana	plastid	32.78	27.43
GSMUA_Achr10P...	Banana	unclear	16.18	26.17
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	9.54	24.21

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr2G06350_001
EnsemblPlants:GSMUA_Achr2P06350_001	EnsemblPlants:GSMUA_Achr2T06350_001	InterPro:IPR023329	UniProt:M0S5M6	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF7	SUPFAM:SSF103511	UniParc:UPI000296E9DA	SEG:seg	:	:

Description

Chlorophyll a-b binding protein 6A, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr2G06350_001]

Coordinates

chr2:+:11174953..11176161

Molecular Weight (calculated)

26226.5 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.084

Length

241 amino acids

Sequence
(BLAST)

001: MASAALRSCA VLFPSLLSSS KSQFNGSFSL PCANGASRFS MSAEWMPGQP RPPYLDGSAP GDFGFDPLRL GEVPENLERY KESELIHCRW AMLAVPGILV
101: PEALGLGNWV KAQEWAAVPG GQATYLGNPV PWGTLPTILV IEFIAIAFVE HQRSMEKDPE KKKYPGGAFD PLGFSKDPAK FQEYKIKEIK NGRLALLAFV
201: GFCVQQSAYP GTGPLENLAT HLADPWHNNI GDIVIPRSVL P

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.