Factsheet for GSMUA_Achr4P33040_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g00630.t01	Wine grape	plastid	93.94	93.58
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	46.59	92.48
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	45.83	90.98
KRH74003	Soybean	nucleus, plastid	90.53	90.19
PGSC0003DMT400010985	Potato	plastid	90.53	90.19
KRH14122	Soybean	nucleus, plastid	90.15	89.81
Solyc12g006140.1.1	Tomato	plastid	90.15	89.81
PGSC0003DMT400015740	Potato	plastid	89.77	89.43
Solyc07g047850.2.1	Tomato	plastid	88.64	88.3
Os03t0592500-01	Rice	extracellular	87.88	88.21
CDY15050	Canola	plastid	88.26	87.92
Zm00001d033132_P001	Maize	plastid	86.36	87.69
Zm00001d033136_P001	Maize	plastid	86.36	87.69
CDX93077	Canola	plastid	87.88	87.55
Bra013183.1-P	Field mustard	plastid	87.88	87.55
EER93861	Sorghum	plastid	86.36	87.02
AT2G05070.1	Thale cress	plastid	86.74	86.42
CDY20039	Canola	plastid	86.74	86.42
Bra039070.1-P	Field mustard	plastid	86.74	86.42
CDY49770	Canola	plastid	86.74	86.09
CDY13732	Canola	plastid	86.74	86.09
Bra025297.1-P	Field mustard	plastid	86.74	86.09
CDY03989	Canola	plastid	86.36	85.71
CDY00149	Canola	plastid	86.36	85.71
CDX83726	Canola	plastid	85.98	85.34
TraesCS5D01G329200.1	Wheat	plastid	84.47	84.79
TraesCS5B01G322900.1	Wheat	plastid	84.47	84.79
TraesCS5A01G322500.1	Wheat	plastid	84.47	84.79
Bra033022.1-P	Field mustard	plastid	82.58	84.5
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	79.55	78.65
AT3G27690.2	Thale cress	golgi, plastid	86.74	76.85
Zm00001d013766_P001	Maize	plastid	40.53	74.31
GSMUA_AchrUn_...	Banana	plastid	62.5	71.43
GSMUA_Achr1P08770_001	Banana	plastid, unclear	64.02	70.12
GSMUA_Achr4P07890_001	Banana	plastid	42.05	69.81
AT2G05100.2	Thale cress	plastid	79.92	66.56
HORVU5Hr1G082420.1	Barley	plastid	84.85	65.31
GSMUA_Achr6P12670_001	Banana	plasma membrane	42.8	40.5
GSMUA_Achr3P02780_001	Banana	plastid	44.32	40.34
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	21.97	39.73
GSMUA_Achr10P...	Banana	plastid	41.29	37.85
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	33.33	35.92
GSMUA_Achr9P02810_001	Banana	plastid	32.95	35.8
GSMUA_Achr9P27480_001	Banana	mitochondrion	42.8	35.09
GSMUA_Achr6P31940_001	Banana	plastid	31.82	34.85
GSMUA_Achr6P20660_001	Banana	mitochondrion	26.89	34.63
GSMUA_Achr2P06350_001	Banana	unclear	31.44	34.44
GSMUA_Achr3P04110_001	Banana	plastid	33.71	32.48
GSMUA_Achr7P13020_001	Banana	plastid	33.33	32.35
GSMUA_Achr2P14960_001	Banana	plastid	29.92	31.47
GSMUA_Achr4P24090_001	Banana	unclear	28.79	30.16
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	28.41	30.12
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	10.61	29.47
GSMUA_Achr10P...	Banana	unclear	15.53	27.52
GSMUA_Achr9P18200_001	Banana	plastid	14.02	27.01

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G33040_001
EnsemblPlants:GSMUA_Achr4P33040_001	EnsemblPlants:GSMUA_Achr4T33040_001	InterPro:IPR023329	UniProt:M0SU66	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF33	SUPFAM:SSF103511	UniParc:UPI0000D7D7CD	:	:	:

Description

Chlorophyll a-b binding protein 151, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G33040_001]

Coordinates

chr4:+:29609933..29611103

Molecular Weight (calculated)

28587.1 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.073

Length

264 amino acids

Sequence
(BLAST)

001: MATSALQQSA FAGQTALKQQ NELVRRVGSS RGRFFMRRTT ASTPKSIWYG PDRPKYLGPF SEQTPSYLTG EFPGDYGWDT AGLSADPETF AKNRELEVIH
101: GRWAMLGALG CVFPEILAKN GVKFGEAVWF KAGAQIFSEG GLDYLGNPNL IHAQSILAIW ACQVVLMGFV EGYRVGGGPL GEGLDAIYPG GAFDPLGLAD
201: DPDAFAELKV KEIKNGRLAM FSMFGFFVQA IVTGKGPIEN LYDHLADPVA NNAWAYATNF VPGK

Best Arabidopsis Sequence Match ( AT3G27690.2 )
(BLAST)

001: MNTLLYKRRL QFNNISFSLT SFLFLCSCLE EAMATSAIQH SSFAGQTTLK PSNDLLRKIG ASNGGGRIIM RRTVKSTPQS IWYGPDRPKY LGPFSENTPS
101: YLTGEYPGDY GWDTAGLSAD PETFAKNREL EVIHSRWAML GALGCTFPEI LSKNGVKFGE AVWFKAGSQI FSEGGLDYLG NPNLIHAQSI LAIWACQVVL
201: MGFIEGYRIG GGPLGEGLDP LYPGGAFDPL NLAEDPEAFS ELKVKELKNG RLAMFSMFGF FVQAIVTGKG PIENLFDHIA DPVANNAWAY ATNFVPGK

Arabidopsis Description

LHCB2.4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMB4]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.