Factsheet for GSMUA_Achr4P24090_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P14960_001	Banana	plastid	90.87	91.24
VIT_17s0000g06350.t01	Wine grape	plastid	86.11	86.11
Bra018144.1-P	Field mustard	plastid	85.32	85.32
CDX99044	Canola	plastid	85.32	85.32
CDY47410	Canola	plastid	85.32	85.32
PGSC0003DMT400050232	Potato	plastid	84.13	84.46
Solyc03g115900.2.1	Tomato	plastid	83.73	84.06
AT3G47470.1	Thale cress	plastid	82.94	83.27
Zm00001d050403_P001	Maize	plastid	80.56	83.2
Solyc06g069730.2.1	Tomato	plastid	81.75	82.4
KRH54568	Soybean	nucleus, plastid	82.14	82.14
PGSC0003DMT400083158	Potato	plastid	81.35	82.0
KRH63318	Soybean	plastid	81.75	81.75
Zm00001d032197_P001	Maize	plastid	79.37	80.97
KXG25214	Sorghum	plastid	79.76	80.08
Os08t0435900-01	Rice	mitochondrion	76.98	79.51
HORVU5Hr1G066280.1	Barley	plastid	75.79	77.96
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	75.79	77.96
TraesCS5B01G227900.1	Wheat	plastid	75.79	77.96
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	75.4	77.55
GSMUA_Achr6P20660_001	Banana	mitochondrion	36.11	44.39
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	41.27	41.77
GSMUA_Achr9P18200_001	Banana	plastid	21.03	38.69
GSMUA_Achr7P13020_001	Banana	plastid	41.67	38.6
GSMUA_Achr2P06350_001	Banana	unclear	36.51	38.17
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	21.83	37.67
GSMUA_Achr3P04110_001	Banana	plastid	40.48	37.23
GSMUA_Achr6P31940_001	Banana	plastid	35.32	36.93
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	34.52	35.51
GSMUA_Achr9P02810_001	Banana	plastid	34.13	35.39
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	12.3	32.63
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	32.14	30.34
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	15.87	30.08
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	15.87	30.08
GSMUA_Achr4P07890_001	Banana	plastid	18.25	28.93
GSMUA_Achr4P33040_001	Banana	plastid, unclear	30.16	28.79
GSMUA_Achr6P12670_001	Banana	plasma membrane	31.35	28.32
GSMUA_Achr10P...	Banana	plastid	31.35	27.43
GSMUA_AchrUn_...	Banana	plastid	25.0	27.27
GSMUA_Achr3P02780_001	Banana	plastid	30.95	26.9
GSMUA_Achr10P...	Banana	unclear	15.87	26.85
GSMUA_Achr1P08770_001	Banana	plastid, unclear	25.4	26.56
GSMUA_Achr9P27480_001	Banana	mitochondrion	30.56	23.91

Protein Annotations

MapMan:1.1.4.1.4	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G24090_001
EnsemblPlants:GSMUA_Achr4P24090_001	EnsemblPlants:GSMUA_Achr4T24090_001	InterPro:IPR023329	UniProt:M0SRM0	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF4	SUPFAM:SSF103511	UniParc:UPI000294EA54	:	:	:

Description

Chlorophyll a-b binding protein 4, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G24090_001]

Coordinates

chr4:+:24022465..24023604

Molecular Weight (calculated)

27562.1 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.015

Length

252 amino acids

Sequence
(BLAST)

001: MATVSTQASV AALRRPCSLR TGFLTGSSGK LSRELAAKSL PSSAFRSVKV EAKKGEWLPG LASPAYLDGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINAPEWYDA GKAEYFASSS TLFVIEFILF HYVEIRRWQD IKYPGSVNQD PIFKSYSLPP NEVGYPGGIF NPLNFAPTLE
201: AKEKELANGR LAMLAFLAFI IQHNLTGKGP FENLLQHLSD PWHNTIIQTL GG

Best Arabidopsis Sequence Match ( AT3G47470.1 )
(BLAST)

001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N

Arabidopsis Description

LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.