Factsheet for Solyc03g115900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 15248779
plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 15248779 doi

S Storf, EJ Stauber, M Hippler, VH Schmid

Institut für Allgemeine Botanik, Johannes Gutenberg-Universität Mainz, Müllerweg 6, 55099 Mainz, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050232	Potato	plastid	98.8	98.8
Solyc06g069730.2.1	Tomato	plastid	88.05	88.4
Bra018144.1-P	Field mustard	plastid	86.45	86.11
CDX99044	Canola	plastid	86.45	86.11
CDY47410	Canola	plastid	86.45	86.11
GSMUA_Achr2P14960_001	Banana	plastid	86.06	86.06
AT3G47470.1	Thale cress	plastid	84.86	84.86
GSMUA_Achr4P24090_001	Banana	unclear	84.06	83.73
Zm00001d050403_P001	Maize	plastid	76.89	79.1
Zm00001d032197_P001	Maize	plastid	76.49	77.73
KXG25214	Sorghum	plastid	77.69	77.69
Os08t0435900-01	Rice	mitochondrion	74.5	76.64
HORVU5Hr1G066280.1	Barley	plastid	72.91	74.69
TraesCS5B01G227900.1	Wheat	plastid	72.91	74.69
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	72.91	74.69
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	72.51	74.29
Solyc10g006230.2.1	Tomato	plastid	48.61	45.19
Solyc12g009200.1.1	Tomato	nucleus, plastid	44.62	43.08
Solyc08g067320.1.1	Tomato	plastid	14.74	40.66
Solyc07g022900.2.1	Tomato	plastid	41.43	39.69
Solyc05g056050.2.1	Tomato	plastid	37.45	38.21
Solyc05g056070.2.1	Tomato	plastid	36.65	37.4
Solyc10g007690.2.1	Tomato	plastid	40.24	37.0
Solyc12g011280.1.1	Tomato	plastid	39.04	35.9
Solyc01g105030.2.1	Tomato	plastid	33.47	32.81
Solyc01g105050.2.1	Tomato	plastid	32.67	32.03
Solyc09g014520.2.1	Tomato	plastid	36.26	31.93
Solyc02g070990.1.1	Tomato	plastid	33.47	31.7
Solyc02g070940.1.1	Tomato	plastid	33.47	31.7
Solyc02g070950.1.1	Tomato	plastid	33.47	31.7
Solyc02g070970.1.1	Tomato	plastid	33.47	31.7
Solyc02g071030.1.1	Tomato	plastid	33.47	31.7
Solyc02g071010.1.1	Tomato	plastid	33.47	31.7
Solyc02g071000.1.1	Tomato	nucleus, plastid	33.47	31.7
Solyc02g070980.1.1	Tomato	nucleus, plastid	33.47	31.7
Solyc03g005780.1.1	Tomato	plastid	33.47	31.46
Solyc03g005770.1.1	Tomato	nucleus	33.07	31.09
Solyc03g005760.1.1	Tomato	nucleus	33.07	31.09
Solyc07g063600.2.1	Tomato	nucleus	31.87	30.53
Solyc12g011450.1.1	Tomato	plastid	31.87	30.19
Solyc06g063370.2.1	Tomato	plastid	32.27	28.32
Solyc07g047850.2.1	Tomato	plastid	29.88	28.3
Solyc12g006140.1.1	Tomato	plastid	29.88	28.3
Solyc08g067330.1.1	Tomato	plastid	10.36	26.53
Solyc04g082920.2.1	Tomato	plastid	15.54	17.89

Protein Annotations

MapMan:1.1.4.1.4	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329
UniProt:K4BL92	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF4	SUPFAM:SSF103511	EnsemblPlantsGene:Solyc03g115900.2
EnsemblPlants:Solyc03g115900.2.1	TMHMM:TMhelix	UniParc:UPI0002768B4F	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4BL92]

Coordinates

chr3:+:65491499..65493138

Molecular Weight (calculated)

27857.2 Da

IEP (calculated)

6.946

GRAVY (calculated)

-0.179

Length

251 amino acids

Sequence
(BLAST)

001: MATVTTQASA AIFRPCASRT RFLTGSSGKL NREVSFRPST FSSYNSFKVE AKKGQWLPGL ASPDYLDGSL PGDNGFDPLG LAEDPENLKW FIQAELVNGR
101: WAMLGVAGML LPEVFTSIGI LNVPKWYDAG KSEYFASSST LFVIEFILFH YVEIRRWQDI KNPGSVNQDP IFKNYSLPPN KCGYPGGIFN PLNFAPTEEA
201: KEKELANGRL AMLAFLGFIV QHNVTGKGPF DNLLQHLSDP WHNTIIQTLS N

Best Arabidopsis Sequence Match ( AT3G47470.1 )
(BLAST)

001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N

Arabidopsis Description

LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.