Factsheet for Solyc05g056070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060313	Potato	plastid	97.15	97.15
Solyc05g056050.2.1	Tomato	plastid	93.5	93.5
AT3G54890.1	Thale cress	plastid	84.15	85.89
GSMUA_Achr6P31940_001	Banana	plastid	84.15	85.89
Bra003198.1-P	Field mustard	plastid	83.74	85.48
CDY07517	Canola	plastid	83.74	85.48
CDX67613	Canola	plastid	83.74	85.48
KRH08384	Soybean	nucleus, plastid	85.37	85.37
CDX78277	Canola	plastid	83.33	85.06
Bra007109.1-P	Field mustard	plastid	83.33	85.06
CDX73435	Canola	plastid	82.93	84.65
KRH70044	Soybean	mitochondrion, nucleus, plastid	84.55	84.55
VIT_13s0019g04140.t01	Wine grape	plastid	83.74	84.43
GSMUA_Achr2P06350_001	Banana	unclear	81.3	82.99
Os06t0320500-01	Rice	plastid	73.98	75.52
EES04597	Sorghum	plastid	74.8	75.1
Zm00001d015385_P001	Maize	plastid	74.8	75.1
TraesCS7D01G227300.1	Wheat	plastid	73.17	73.47
TraesCS7B01G192500.1	Wheat	plastid	73.17	73.47
TraesCS7A01G227100.1	Wheat	plastid	73.17	72.87
HORVU7Hr1G046320.2	Barley	plastid	72.36	62.46
Zm00001d024372_P001	Maize	plastid	45.53	47.26
Solyc08g067320.1.1	Tomato	plastid	17.07	46.15
Solyc03g115900.2.1	Tomato	plastid	37.4	36.65
Solyc12g009200.1.1	Tomato	nucleus, plastid	38.21	36.15
Solyc03g005780.1.1	Tomato	plastid	39.02	35.96
Solyc06g069730.2.1	Tomato	plastid	36.18	35.6
Solyc10g006230.2.1	Tomato	plastid	39.02	35.56
Solyc02g070990.1.1	Tomato	plastid	38.21	35.47
Solyc03g005760.1.1	Tomato	nucleus	38.21	35.21
Solyc03g005770.1.1	Tomato	nucleus	38.21	35.21
Solyc02g071010.1.1	Tomato	plastid	37.8	35.09
Solyc02g070940.1.1	Tomato	plastid	37.8	35.09
Solyc02g070950.1.1	Tomato	plastid	37.8	35.09
Solyc02g070970.1.1	Tomato	plastid	37.8	35.09
Solyc02g070980.1.1	Tomato	nucleus, plastid	37.8	35.09
Solyc02g071030.1.1	Tomato	plastid	37.8	35.09
Solyc02g071000.1.1	Tomato	nucleus, plastid	37.8	35.09
Solyc09g014520.2.1	Tomato	plastid	39.84	34.39
Solyc07g047850.2.1	Tomato	plastid	35.77	33.21
Solyc12g006140.1.1	Tomato	plastid	35.77	33.21
Solyc07g063600.2.1	Tomato	nucleus	35.37	33.21
Solyc12g011450.1.1	Tomato	plastid	35.37	32.83
Solyc10g007690.2.1	Tomato	plastid	35.77	32.23
Solyc01g105050.2.1	Tomato	plastid	32.52	31.25
Solyc12g011280.1.1	Tomato	plastid	34.55	31.14
Solyc07g022900.2.1	Tomato	plastid	32.93	30.92
Solyc01g105030.2.1	Tomato	plastid	32.11	30.86
Solyc06g063370.2.1	Tomato	plastid	34.15	29.37
Solyc08g067330.1.1	Tomato	plastid	10.98	27.55
Solyc04g082920.2.1	Tomato	plastid	17.89	20.18

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	UniProt:A0A0J9YZP9	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628
GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409
GO:GO:0046872	InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF7	SUPFAM:SSF103511
EnsemblPlantsGene:Solyc05g056070.2	EnsemblPlants:Solyc05g056070.2.1	UniParc:UPI000016DDFD	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A0J9YZP9]

Coordinates

chr5:+:65460627..65462028

Molecular Weight (calculated)

26467.9 Da

IEP (calculated)

6.117

GRAVY (calculated)

-0.033

Length

246 amino acids

Sequence
(BLAST)

001: MASNTLMSCG IPAVCPSFLS STKSKFAAAM PVSVGATNSM SRFSMSADWM PGQPRPSYLD GSAPGDFGFD PLGLGEVPAN LERYKESELI HCRWAMLAVP
101: GIIVPEALGL GNWVKAQEWA AIPGGQATYL GQPVPWGTLP TILAIEFLAI AFVEHQRSME KDSEKKKYPG GAFDPLGYSK DPAKFEELKV KEIKNGRLAL
201: LAFVGFCVQQ SAYPGTGPLE NLATHLADPW HNNIGDVIIP KGIFPN

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.