Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07517 | Canola | plastid | 98.34 | 98.34 |
| Bra003198.1-P | Field mustard | plastid | 97.51 | 97.51 |
| CDX67613 | Canola | plastid | 97.51 | 97.51 |
| CDX78277 | Canola | plastid | 97.1 | 97.1 |
| Bra007109.1-P | Field mustard | plastid | 96.68 | 96.68 |
| CDX73435 | Canola | plastid | 96.68 | 96.68 |
| Solyc05g056070.2.1 | Tomato | plastid | 85.89 | 84.15 |
| GSMUA_Achr6P31940_001 | Banana | plastid | 83.82 | 83.82 |
| PGSC0003DMT400060313 | Potato | plastid | 85.48 | 83.74 |
| VIT_13s0019g04140.t01 | Wine grape | plastid | 84.65 | 83.61 |
| GSMUA_Achr2P06350_001 | Banana | unclear | 82.99 | 82.99 |
| Solyc05g056050.2.1 | Tomato | plastid | 84.65 | 82.93 |
| PGSC0003DMT400059995 | Potato | plastid | 84.65 | 82.93 |
| KRH08384 | Soybean | nucleus, plastid | 82.99 | 81.3 |
| KRH70044 | Soybean | mitochondrion, nucleus, plastid | 82.57 | 80.89 |
| TraesCS7B01G192500.1 | Wheat | plastid | 76.76 | 75.51 |
| TraesCS7D01G227300.1 | Wheat | plastid | 76.76 | 75.51 |
| Os06t0320500-01 | Rice | plastid | 75.1 | 75.1 |
| TraesCS7A01G227100.1 | Wheat | plastid | 76.76 | 74.9 |
| EES04597 | Sorghum | plastid | 75.93 | 74.69 |
| Zm00001d015385_P001 | Maize | plastid | 75.52 | 74.29 |
| HORVU7Hr1G046320.2 | Barley | plastid | 75.93 | 64.21 |
| Zm00001d024372_P001 | Maize | plastid | 46.06 | 46.84 |
| AT3G61470.1 | Thale cress | plastid | 39.0 | 36.58 |
| AT3G47470.1 | Thale cress | plastid | 37.76 | 36.26 |
| AT2G34420.1 | Thale cress | plastid | 39.42 | 35.85 |
| AT1G29910.1 | Thale cress | plastid | 38.59 | 34.83 |
| AT1G29920.1 | Thale cress | plastid | 38.59 | 34.83 |
| AT1G29930.1 | Thale cress | plastid | 38.59 | 34.83 |
| AT2G34430.1 | Thale cress | plastid | 38.17 | 34.59 |
| AT3G08940.2 | Thale cress | plastid | 41.08 | 34.49 |
| AT5G01530.1 | Thale cress | plastid | 41.49 | 34.48 |
| AT1G45474.2 | Thale cress | mitochondrion | 34.85 | 32.81 |
| AT2G05070.1 | Thale cress | plastid | 35.68 | 32.45 |
| AT2G40100.1 | Thale cress | plastid | 36.93 | 32.25 |
| AT5G54270.1 | Thale cress | plastid | 35.27 | 32.08 |
| AT1G19150.1 | Thale cress | plastid | 35.68 | 31.85 |
| AT5G28450.1 | Thale cress | plastid | 22.82 | 31.79 |
| AT1G15820.1 | Thale cress | plastid | 33.61 | 31.4 |
| AT1G61520.1 | Thale cress | plastid | 34.02 | 30.04 |
| AT4G10340.1 | Thale cress | plastid | 34.44 | 29.64 |
| AT3G27690.2 | Thale cress | golgi, plastid | 35.27 | 28.52 |
| AT1G76570.1 | Thale cress | plastid | 35.68 | 26.3 |
| AT2G05100.2 | Thale cress | plastid | 31.12 | 23.66 |
Protein Annotations
| MapMan:1.1.4.1.1 | Gene3D:1.10.3460.10 | PDB:2O01 | PDB:2WSC | PDB:2WSE | PDB:2WSF |
| PDB:4XK8 | EntrezGene:824654 | UniProt:A0A178VBT7 | ProteinID:AAA32759.1 | ProteinID:AEE79306.1 | EMBL:AF324692 |
| EMBL:AF325016 | EMBL:AF326866 | EMBL:AF339688 | EMBL:AF361847 | EMBL:AK317555 | ArrayExpress:AT3G54890 |
| EnsemblPlantsGene:AT3G54890 | RefSeq:AT3G54890 | TAIR:AT3G54890 | RefSeq:AT3G54890-TAIR-G | EnsemblPlants:AT3G54890.1 | TAIR:AT3G54890.1 |
| EMBL:AY070473 | EMBL:AY094437 | Unigene:At.23982 | EMBL:BT000852 | ProteinID:CAB41095.1 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009409 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 |
| GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009637 |
| GO:GO:0009644 | GO:GO:0009645 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0010114 | GO:GO:0010218 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019904 | GO:GO:0031409 | GO:GO:0046872 |
| InterPro:IPR023329 | Symbol:LHCA1 | RefSeq:NP_191049.1 | ProteinID:OAP03254.1 | PFAM:PF00504 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000039 | PO:PO:0000112 | PO:PO:0000223 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005645 |
| PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR21649 | PANTHER:PTHR21649:SF7 | UniProt:Q01667 | SUPFAM:SSF103511 | UniParc:UPI00000AC74E | EMBL:X56062 |
| SEG:seg | : | : | : | : | : |
Description
LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
Coordinates
chr3:-:20339504..20341176
Molecular Weight (calculated)
25997.4 Da
IEP (calculated)
6.674
GRAVY (calculated)
-0.074
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.