Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026099.1-P | Field mustard | plastid | 94.57 | 94.57 |
| CDY33376 | Canola | plastid | 93.8 | 93.8 |
| KRH10515 | Soybean | mitochondrion, nucleus, plastid | 81.78 | 81.15 |
| Solyc01g105050.2.1 | Tomato | plastid | 80.23 | 80.86 |
| KRH43915 | Soybean | mitochondrion, nucleus, plastid | 81.78 | 80.84 |
| VIT_12s0055g01110.t01 | Wine grape | plastid | 79.84 | 80.16 |
| PGSC0003DMT400032790 | Potato | plastid | 79.46 | 80.08 |
| PGSC0003DMT400032791 | Potato | plastid | 78.68 | 79.3 |
| GSMUA_Achr10P... | Banana | unclear | 45.74 | 79.19 |
| Solyc01g105030.2.1 | Tomato | plastid | 78.29 | 78.91 |
| Zm00001d026599_P001 | Maize | plastid | 74.81 | 77.82 |
| Zm00001d001857_P001 | Maize | plastid | 75.97 | 77.47 |
| TraesCS2A01G342600.1 | Wheat | plastid | 75.97 | 76.86 |
| TraesCS2B01G340300.1 | Wheat | plastid | 75.97 | 76.86 |
| OQU82564 | Sorghum | plastid | 75.97 | 76.86 |
| TraesCS2D01G320900.1 | Wheat | plastid | 75.97 | 76.86 |
| Os04t0457000-01 | Rice | extracellular, plasma membrane, plastid | 74.81 | 76.59 |
| Zm00001d032051_P001 | Maize | mitochondrion | 24.81 | 71.11 |
| HORVU2Hr1G079920.1 | Barley | cytosol, mitochondrion, plastid | 70.54 | 62.12 |
| HORVU2Hr1G079910.1 | Barley | cytosol | 40.7 | 51.72 |
| Zm00001d040012_P001 | Maize | plastid | 24.42 | 46.32 |
| Zm00001d011218_P001 | Maize | plastid | 27.13 | 42.68 |
| AT1G19150.1 | Thale cress | plastid | 35.66 | 34.07 |
| AT1G45474.2 | Thale cress | mitochondrion | 33.72 | 33.98 |
| AT3G61470.1 | Thale cress | plastid | 33.72 | 33.85 |
| AT3G54890.1 | Thale cress | plastid | 31.4 | 33.61 |
| AT2G40100.1 | Thale cress | plastid | 33.33 | 31.16 |
| AT3G47470.1 | Thale cress | plastid | 28.68 | 29.48 |
| AT2G34420.1 | Thale cress | plastid | 30.23 | 29.43 |
| AT5G54270.1 | Thale cress | plastid | 30.23 | 29.43 |
| AT2G34430.1 | Thale cress | plastid | 30.23 | 29.32 |
| AT1G29930.1 | Thale cress | plastid | 30.23 | 29.21 |
| AT1G29920.1 | Thale cress | plastid | 30.23 | 29.21 |
| AT1G29910.1 | Thale cress | plastid | 30.23 | 29.21 |
| AT3G08940.2 | Thale cress | plastid | 32.17 | 28.92 |
| AT5G01530.1 | Thale cress | plastid | 32.17 | 28.62 |
| AT1G61520.1 | Thale cress | plastid | 28.68 | 27.11 |
| AT2G05070.1 | Thale cress | plastid | 26.74 | 26.04 |
| AT4G10340.1 | Thale cress | plastid | 26.74 | 24.64 |
| AT5G28450.1 | Thale cress | plastid | 16.28 | 24.28 |
| AT3G27690.2 | Thale cress | golgi, plastid | 26.74 | 23.15 |
| AT1G76570.1 | Thale cress | plastid | 28.29 | 22.32 |
| AT2G05100.2 | Thale cress | plastid | 25.58 | 20.82 |
Protein Annotations
| MapMan:1.1.1.1.4 | Gene3D:1.10.3460.10 | PDB:5MDX | EntrezGene:838151 | ProteinID:AAF82152.1 | ProteinID:AEE29369.1 |
| EMBL:AF332425 | ArrayExpress:AT1G15820 | EnsemblPlantsGene:AT1G15820 | RefSeq:AT1G15820 | TAIR:AT1G15820 | RefSeq:AT1G15820-TAIR-G |
| EnsemblPlants:AT1G15820.1 | TAIR:AT1G15820.1 | EMBL:AY065113 | EMBL:AY081644 | Unigene:At.15569 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009534 | GO:GO:0009535 |
| GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009783 |
| GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010196 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019904 | GO:GO:0031409 |
| InterPro:IPR023329 | Symbol:LHCB6 | RefSeq:NP_173034.1 | PFAM:PF00504 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR21649 | PANTHER:PTHR21649:SF2 | UniProt:Q9LMQ2 | SUPFAM:SSF103511 | UniParc:UPI00000A45F9 | SEG:seg |
Description
LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
Coordinates
chr1:-:5446462..5447880
Molecular Weight (calculated)
27524.0 Da
IEP (calculated)
7.666
GRAVY (calculated)
0.033
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.