Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90755 | Canola | plastid | 96.43 | 96.43 |
| CDY05098 | Canola | plastid | 95.71 | 95.71 |
| Bra000708.1-P | Field mustard | plastid | 95.71 | 95.71 |
| GSMUA_Achr6P12670_001 | Banana | plasma membrane | 82.14 | 82.44 |
| PGSC0003DMT400068129 | Potato | plastid | 82.86 | 81.4 |
| Solyc06g063370.2.1 | Tomato | plastid | 82.86 | 81.12 |
| Os11t0242800-01 | Rice | plastid | 80.0 | 79.15 |
| TraesCS4B01G089500.1 | Wheat | mitochondrion, plastid | 80.71 | 79.02 |
| TraesCS4D01G086400.1 | Wheat | plastid | 80.71 | 79.02 |
| Zm00001d048998_P001 | Maize | plastid | 79.64 | 78.8 |
| TraesCS4A01G226900.2 | Wheat | mitochondrion, plastid | 80.71 | 78.47 |
| Zm00001d007267_P002 | Maize | plastid | 79.29 | 78.45 |
| EES09551 | Sorghum | plastid | 78.93 | 78.37 |
| GSMUA_Achr3P02780_001 | Banana | plastid | 81.07 | 78.28 |
| GSMUA_Achr10P... | Banana | plastid | 78.21 | 76.04 |
| HORVU4Hr1G015260.2 | Barley | plastid | 71.43 | 69.44 |
| VIT_18s0089g01170.t01 | Wine grape | cytosol, extracellular, plastid | 86.43 | 60.2 |
| AT1G29910.1 | Thale cress | plastid | 40.71 | 42.7 |
| AT1G29920.1 | Thale cress | plastid | 40.71 | 42.7 |
| AT2G34420.1 | Thale cress | plastid | 40.36 | 42.64 |
| KRH58809 | Soybean | mitochondrion | 48.21 | 42.59 |
| AT2G34430.1 | Thale cress | plastid | 40.36 | 42.48 |
| AT1G29930.1 | Thale cress | plastid | 40.36 | 42.32 |
| AT5G54270.1 | Thale cress | plastid | 38.93 | 41.13 |
| AT2G05070.1 | Thale cress | plastid | 38.93 | 41.13 |
| AT3G27690.2 | Thale cress | golgi, plastid | 38.57 | 36.24 |
| AT3G54890.1 | Thale cress | plastid | 29.64 | 34.44 |
| AT1G61520.1 | Thale cress | plastid | 33.21 | 34.07 |
| AT3G61470.1 | Thale cress | plastid | 30.36 | 33.07 |
| AT1G45474.2 | Thale cress | mitochondrion | 30.0 | 32.81 |
| AT3G47470.1 | Thale cress | plastid | 29.29 | 32.67 |
| AT2G05100.2 | Thale cress | plastid | 35.71 | 31.55 |
| AT1G19150.1 | Thale cress | plastid | 30.36 | 31.48 |
| AT1G76570.1 | Thale cress | plastid | 36.43 | 31.19 |
| AT2G40100.1 | Thale cress | plastid | 30.36 | 30.8 |
| AT3G08940.2 | Thale cress | plastid | 31.43 | 30.66 |
| AT5G01530.1 | Thale cress | plastid | 31.43 | 30.34 |
| AT5G28450.1 | Thale cress | plastid | 16.79 | 27.17 |
| AT1G15820.1 | Thale cress | plastid | 24.64 | 26.74 |
Protein Annotations
| MapMan:1.1.1.1.3 | Gene3D:1.10.3460.10 | PDB:5MDX | EntrezGene:826626 | UniProt:A0A178UW55 | ProteinID:AEE82869.1 |
| EMBL:AF134129 | EMBL:AF326900 | EMBL:AF339718 | EMBL:AF380631 | EMBL:AF424597 | ArrayExpress:AT4G10340 |
| EnsemblPlantsGene:AT4G10340 | RefSeq:AT4G10340 | TAIR:AT4G10340 | RefSeq:AT4G10340-TAIR-G | EnsemblPlants:AT4G10340.1 | TAIR:AT4G10340.1 |
| EMBL:AY054126 | EMBL:AY087939 | ProteinID:CAB39787.1 | ProteinID:CAB78157.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind |
| InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009517 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009534 | GO:GO:0009535 |
| GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009765 | GO:GO:0009768 |
| GO:GO:0009783 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010114 | GO:GO:0010196 | GO:GO:0010207 |
| GO:GO:0010218 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019904 | GO:GO:0031409 | GO:GO:0042651 |
| GO:GO:0046872 | InterPro:IPR023329 | Symbol:LHCB5 | RefSeq:NP_192772.1 | ProteinID:OAO98266.1 | PFAM:PF00504 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000039 | PO:PO:0000112 | PO:PO:0000223 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005645 | PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF53 | UniProt:Q9XF89 | SUPFAM:SSF103511 | UniParc:UPI000012713A |
| SEG:seg | : | : | : | : | : |
Description
LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
Coordinates
chr4:+:6408007..6409849
Molecular Weight (calculated)
30158.3 Da
IEP (calculated)
6.294
GRAVY (calculated)
-0.025
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.