Factsheet for VIT_18s0089g01170.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g063370.2.1	Tomato	plastid	63.93	89.86
KRG92462	Soybean	nucleus, plastid	64.18	89.58
KRH34336	Soybean	plastid	63.93	89.55
PGSC0003DMT400068129	Potato	plastid	63.43	89.47
KRH38736	Soybean	nucleus, plastid	64.18	88.66
KRH09238	Soybean	mitochondrion, nucleus, plastid	63.43	88.24
CDX90755	Canola	plastid	60.2	86.43
CDY05098	Canola	plastid	60.2	86.43
AT4G10340.1	Thale cress	plastid	60.2	86.43
CDY60092	Canola	plastid	60.2	86.12
Bra000708.1-P	Field mustard	plastid	59.7	85.71
GSMUA_Achr3P02780_001	Banana	plastid	61.19	84.83
GSMUA_Achr6P12670_001	Banana	plasma membrane	58.71	84.59
Bra037913.1-P	Field mustard	plastid	58.96	84.34
GSMUA_Achr10P...	Banana	plastid	60.2	84.03
Os11t0242800-01	Rice	plastid	57.71	81.98
CDX86864	Canola	plastid	42.54	81.82
EES09551	Sorghum	plastid	56.47	80.5
TraesCS4D01G086400.1	Wheat	plastid	56.47	79.37
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	56.47	79.37
Zm00001d048998_P001	Maize	plastid	55.72	79.15
Zm00001d007267_P002	Maize	plastid	55.72	79.15
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	56.47	78.82
HORVU4Hr1G015260.2	Barley	plastid	51.24	71.53
VIT_07s0005g02220.t01	Wine grape	plastid	29.85	45.63
VIT_19s0014g00160.t01	Wine grape	plastid	30.1	45.32
VIT_12s0028g00320.t01	Wine grape	plastid	30.35	45.19
VIT_10s0003g02890.t01	Wine grape	plastid	29.35	44.7
VIT_10s0003g02900.t01	Wine grape	plastid	29.35	44.7
VIT_12s0057g00630.t01	Wine grape	plastid	28.61	43.4
VIT_00s0181g00180.t01	Wine grape	plastid	28.86	43.12
VIT_19s0014g03660.t01	Wine grape	plastid	28.36	42.86
VIT_00s0181g00200.t01	Wine grape	plastid	28.61	42.75
VIT_13s0019g04140.t01	Wine grape	plastid	20.9	34.43
VIT_17s0000g06350.t01	Wine grape	plastid	21.14	33.73
VIT_15s0024g00040.t01	Wine grape	plastid	22.89	33.58
VIT_18s0122g00430.t01	Wine grape	plastid	27.36	33.23
VIT_01s0010g03620.t01	Wine grape	plastid	22.39	33.21
VIT_11s0016g00730.t01	Wine grape	plastid	21.14	32.82
VIT_18s0001g10550.t01	Wine grape	plastid	20.9	31.82
VIT_12s0055g01110.t01	Wine grape	plastid	17.41	27.24
VIT_08s0007g02190.t01	Wine grape	plastid	21.39	25.15

Protein Annotations

MapMan:1.1.1.1.3	Gene3D:1.10.3460.10	EntrezGene:100246457	wikigene:100246457	EMBL:AM446873	ProteinID:CAN76428
ProteinID:CAN76428.1	ProteinID:CCB44105	ProteinID:CCB44105.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
UniProt:F6GVX0	EMBL:FN594956	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EntrezGene:LOC100246457	wikigene:LOC100246457	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF53	SUPFAM:SSF103511	TIGR:TC53442	TIGR:TC67685	UniParc:UPI00021091D8
ArrayExpress:VIT_18s0089g01170	EnsemblPlantsGene:VIT_18s0089g01170	EnsemblPlants:VIT_18s0089g01170.t01	RefSeq:XP_002264295	RefSeq:XP_002264295.1	SEG:seg

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:F6GVX0]

Coordinates

chr18:-:29067665..29070719

Molecular Weight (calculated)

43838.7 Da

IEP (calculated)

8.008

GRAVY (calculated)

-0.094

Length

402 amino acids

Sequence
(BLAST)

001: MRDHYKPFIS LITSIPVLSE EHQKWIDRVI QTQATNKFRI IPRHHHHLPP HPTHPITTPL QITPFPSPTN HLHPTWHVHI HQLHHLVSAS SPSPPPIAST
101: SHYRRLNFPV TLMASLAATT AASSLGVSEM LGNPLNFSGA SRTAPSASSP ATFKTVALFS KKKAAPAKAK PAPVSPADEE LAKWYGPDRR IFLPEGLLDR
201: SEIPAYLTGE VPGDYGYDPF GLSKKPEDFA KYQAYELIHA RWAMLGAAGF IIPEAFNKFG ANCGPEAVWF KTGALLLDGN TLNYFGKNIP INLIFAVVAE
301: VVLVGGAEYY RIINGLDLED KLHPGGPFDP LGLANDPDQA ALLKVKEIKN GRLAMFAMLG FFIQAYVTGE GPVENLAAHL SDPFGNNLLT VIAGTAERAP
401: TL

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.