Factsheet for VIT_08s0007g02190.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01530.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	30.41	86.67
Solyc09g014520.2.1	Tomato	plastid	70.76	84.91
PGSC0003DMT400021871	Potato	plastid	70.76	84.91
KRH75874	Soybean	mitochondrion, nucleus, plastid	71.05	83.79
CDY53084	Canola	plastid	70.47	83.39
Bra029732.1-P	Field mustard	plastid	70.18	83.33
CDY44667	Canola	plastid	70.18	83.33
KRH65776	Soybean	nucleus, plastid	70.47	83.1
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	59.36	82.86
AT3G08940.2	Thale cress	plastid	69.3	82.58
Bra028906.1-P	Field mustard	plastid	69.3	82.29
CDY04834	Canola	plastid	69.01	82.23
TraesCS2D01G209900.1	Wheat	plastid	68.13	81.47
TraesCS2B01G233400.1	Wheat	plastid	68.13	81.47
TraesCS2A01G206200.1	Wheat	plastid	68.13	81.47
AT5G01530.1	Thale cress	plastid	69.01	81.38
GSMUA_Achr9P02810_001	Banana	plastid	57.31	80.66
EER99537	Sorghum	plastid	67.84	80.56
Os07t0558400-01	Rice	plasma membrane, plastid	68.13	80.34
Zm00001d021763_P001	Maize	plastid	67.54	79.38
Zm00001d006587_P001	Maize	plastid	66.96	78.69
HORVU5Hr1G013200.1	Barley	plastid	57.89	69.96
VIT_13s0019g04140.t01	Wine grape	plastid	27.49	38.52
VIT_10s0003g02900.t01	Wine grape	plastid	27.78	35.98
VIT_10s0003g02890.t01	Wine grape	plastid	27.49	35.61
VIT_07s0005g02220.t01	Wine grape	plastid	26.9	34.98
VIT_17s0000g06350.t01	Wine grape	plastid	25.73	34.92
VIT_19s0014g00160.t01	Wine grape	plastid	27.19	34.83
VIT_11s0016g00730.t01	Wine grape	plastid	26.32	34.75
VIT_12s0055g01110.t01	Wine grape	plastid	25.44	33.85
VIT_12s0028g00320.t01	Wine grape	plastid	26.61	33.7
VIT_19s0014g03660.t01	Wine grape	plastid	25.44	32.71
VIT_12s0057g00630.t01	Wine grape	plastid	25.15	32.45
VIT_01s0010g03620.t01	Wine grape	plastid	25.44	32.1
VIT_00s0181g00200.t01	Wine grape	plastid	25.15	31.97
VIT_00s0181g00180.t01	Wine grape	plastid	25.15	31.97
VIT_18s0001g10550.t01	Wine grape	plastid	23.68	30.68
VIT_15s0024g00040.t01	Wine grape	plastid	24.56	30.66
VIT_18s0122g00430.t01	Wine grape	plastid	26.02	26.89
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	25.15	21.39

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	EntrezGene:100266604	wikigene:100266604	EMBL:AM479479	ProteinID:CAN77492
ProteinID:CAN77492.1	ProteinID:CCB55497	ProteinID:CCB55497.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
UniProt:F6HKS7	EMBL:FN595991	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EntrezGene:LOC100266604	wikigene:LOC100266604	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF6	SUPFAM:SSF103511	TIGR:TC58014	TIGR:TC61762	TIGR:TC67380
UniParc:UPI00015C99DE	ArrayExpress:VIT_08s0007g02190	EnsemblPlantsGene:VIT_08s0007g02190	EnsemblPlants:VIT_08s0007g02190.t01	RefSeq:XP_002279834	RefSeq:XP_002279834.1
SEG:seg	:	:	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:F6HKS7]

Coordinates

chr8:+:16224845..16226090

Molecular Weight (calculated)

37358.5 Da

IEP (calculated)

6.867

GRAVY (calculated)

-0.138

Length

342 amino acids

Sequence
(BLAST)

001: MDTLLQSNGH QASPWIYHKA FTKPNISPVE SSHHHNSILT LSNISTPATP YTTAMATTTA AAAAATSSFM GTRLPDVHSN TGRVQARFGF GRKKAPAKKA
101: AKRVSDRPLW FPGAVAPEWL DGTLVGDYGF DPFGLGKPAE YLQYDYDSLD QNLAKNIAGD VIGTRFEGGE VKSTPFQPYT EVFGLQRFRE CELIHGRWAM
201: LATLGALAVE SLTGVTWQDA GKVELIEGSS YLGQPLPFSM TTLIWIEVLV IGYIEFQRNA ELDPEKRLYP GGKFFDPLGL AADPEKKAVL QLAEIKHARL
301: AMIGFLGFAV QAAVTGKGPL NNWATHLSDP LHTTIIDNVF YS

Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Arabidopsis Description

LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.