Factsheet for VIT_00s0181g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0181g00180.t01	Wine grape	plastid	99.63	99.63
VIT_19s0014g03660.t01	Wine grape	plastid	91.82	92.86
GSMUA_AchrUn_...	Banana	plastid	78.07	90.91
KRH27171	Soybean	mitochondrion, nucleus, plastid	89.96	90.3
KRH22164	Soybean	nucleus, plastid	89.59	90.26
GSMUA_Achr1P08770_001	Banana	plastid, unclear	78.81	87.97
PGSC0003DMT400022072	Potato	plastid	86.62	87.92
AT5G54270.1	Thale cress	plastid	86.25	87.55
Bra002999.1-P	Field mustard	plastid	85.87	87.17
Solyc12g011450.1.1	Tomato	plastid	85.87	87.17
Os07t0562700-01	Rice	extracellular, plastid	84.01	84.96
TraesCS1B01G451100.1	Wheat	plastid	81.41	81.72
TraesCS1D01G428200.1	Wheat	plastid	81.41	81.72
TraesCS2A01G204800.1	Wheat	plastid	81.41	81.72
HORVU2Hr1G040780.7	Barley	plastid	80.3	79.41
VIT_12s0057g00630.t01	Wine grape	plastid	70.63	71.7
VIT_07s0005g02220.t01	Wine grape	plastid	68.77	70.34
VIT_10s0003g02900.t01	Wine grape	plastid	68.4	69.7
VIT_19s0014g00160.t01	Wine grape	plastid	69.14	69.66
VIT_12s0028g00320.t01	Wine grape	plastid	69.89	69.63
VIT_10s0003g02890.t01	Wine grape	plastid	67.66	68.94
VIT_13s0019g04140.t01	Wine grape	plastid	31.23	34.43
VIT_15s0024g00040.t01	Wine grape	plastid	34.94	34.31
VIT_18s0122g00430.t01	Wine grape	plastid	40.89	33.23
VIT_11s0016g00730.t01	Wine grape	plastid	31.97	33.2
VIT_17s0000g06350.t01	Wine grape	plastid	29.37	31.35
VIT_18s0001g10550.t01	Wine grape	plastid	29.74	30.3
VIT_01s0010g03620.t01	Wine grape	plastid	30.11	29.89
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	42.75	28.61
VIT_12s0055g01110.t01	Wine grape	plastid	26.77	28.02
VIT_08s0007g02190.t01	Wine grape	plastid	31.97	25.15

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:100251653	wikigene:100251653	UniProt:A5BW14	EMBL:AM473218
ProteinID:CAN77327	ProteinID:CAN77327.1	ProteinID:CCB48281	ProteinID:CCB48281.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:FN595252	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EntrezGene:LOC100251653	wikigene:LOC100251653	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF11	SUPFAM:SSF103511	UniParc:UPI0001521C86	ArrayExpress:VIT_00s0181g00200	EnsemblPlantsGene:VIT_00s0181g00200
EnsemblPlants:VIT_00s0181g00200.t01	RefSeq:XP_002274150	RefSeq:XP_002274150.2	SEG:seg	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A5BW14]

Coordinates

chrUn:+:7885106..7886115

Molecular Weight (calculated)

29036.8 Da

IEP (calculated)

4.897

GRAVY (calculated)

0.006

Length

269 amino acids

Sequence
(BLAST)

001: MVATVMAATA SSSTGLRPTQ FVGQTRGSNA NQLREVVPMG TGKFTMGNEL WYGPDRVKYL GPFSAQTPSY LTGEFPGDYG WDTAGLSADP EAFARNRALE
101: VIHGRWAMLG AFGCITPEVL EKWVKVDFKE PVWFKAGAQI FSEGGLDYLG NPNLVHAQSI LAVLGFQVVL MGLVEGYRIN GLPGVGEGND LYPGGPYFDP
201: LGLADDPVTF AELKVKEIKN GRLAMFSMFG FFVQAIVTGK GPLENLLDHL DNPVANNAWA YATKFVPGS

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.