Factsheet for VIT_01s0010g03620.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037285	Potato	extracellular, vacuole	54.24	94.23
CDY43936	Canola	plastid	81.92	86.72
KRH06319	Soybean	nucleus, plastid	85.98	86.3
Bra014433.1-P	Field mustard	plastid	81.18	85.94
CDX89120	Canola	plastid	81.18	85.94
AT3G61470.1	Thale cress	plastid	80.81	85.21
Solyc10g006230.2.1	Tomato	plastid	84.13	84.44
TraesCS2B01G220100.1	Wheat	golgi, plastid	78.23	83.14
TraesCS2D01G200700.1	Wheat	plastid	77.86	82.75
Bra003451.1-P	Field mustard	plastid	78.97	82.63
TraesCS2A01G187200.1	Wheat	plastid	78.23	82.49
Zm00001d006663_P001	Maize	plastid	78.6	81.92
CDY51572	Canola	plastid	78.23	81.85
KXG36552	Sorghum	plastid	78.97	81.37
Os07t0577600-01	Rice	plastid	78.23	80.61
GSMUA_Achr6P20660_001	Banana	mitochondrion	60.89	80.49
KRH47742	Soybean	nucleus	81.55	78.37
Zm00001d021906_P001	Maize	plastid	77.86	78.15
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	69.74	75.9
HORVU2Hr1G036960.4	Barley	plastid	77.12	74.11
KRH68993	Soybean	plastid	79.34	69.81
AT5G28450.1	Thale cress	plastid	40.96	64.16
VIT_11s0016g00730.t01	Wine grape	plastid	54.24	56.76
VIT_17s0000g06350.t01	Wine grape	plastid	45.76	49.21
VIT_13s0019g04140.t01	Wine grape	plastid	35.06	38.93
VIT_18s0001g10550.t01	Wine grape	plastid	37.64	38.64
VIT_15s0024g00040.t01	Wine grape	plastid	38.01	37.59
VIT_10s0003g02890.t01	Wine grape	plastid	34.32	35.23
VIT_10s0003g02900.t01	Wine grape	plastid	34.32	35.23
VIT_19s0014g00160.t01	Wine grape	plastid	34.32	34.83
VIT_12s0028g00320.t01	Wine grape	plastid	34.69	34.81
VIT_12s0055g01110.t01	Wine grape	plastid	32.1	33.85
VIT_07s0005g02220.t01	Wine grape	plastid	32.84	33.84
VIT_12s0057g00630.t01	Wine grape	plastid	32.47	33.21
VIT_00s0181g00180.t01	Wine grape	plastid	29.89	30.11
VIT_00s0181g00200.t01	Wine grape	plastid	29.89	30.11
VIT_19s0014g03660.t01	Wine grape	plastid	29.15	29.7
VIT_18s0122g00430.t01	Wine grape	plastid	32.84	26.89
VIT_08s0007g02190.t01	Wine grape	plastid	32.1	25.44
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	33.21	22.39

Protein Annotations

MapMan:1.1.4.1.2	Gene3D:1.10.3460.10	EntrezGene:100266036	wikigene:100266036	EMBL:AM446193	ProteinID:CAN72005
ProteinID:CAN72005.1	ProteinID:CBI27656	ProteinID:CBI27656.3	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
UniProt:D7TAY3	EMBL:FN595754	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EntrezGene:LOC100266036	wikigene:LOC100266036	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF57	SUPFAM:SSF103511	TIGR:TC55189	TIGR:TC57132	UniParc:UPI0001982B54
ArrayExpress:VIT_01s0010g03620	EnsemblPlantsGene:VIT_01s0010g03620	EnsemblPlants:VIT_01s0010g03620.t01	unigene:Vvi.6744	RefSeq:XP_002277906	RefSeq:XP_002277906.1
RefSeq:XP_010655886.1	SEG:seg	:	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:D7TAY3]

Coordinates

chr1:-:20954792..20957007

Molecular Weight (calculated)

28964.8 Da

IEP (calculated)

8.058

GRAVY (calculated)

0.079

Length

271 amino acids

Sequence
(BLAST)

001: MASVCASSAM AAVATISPSS QKTGSVVGAT KASFLGGKRL SLKKFTAPAA GTRSFTVSAA AADPNRPLWF PGSTPPPWLD GSLPGDFGFD PLGLGSDPET
101: LKWMVQSEIV HCRWAMLGAA GIFIPEFLTK IGILNTPSWY TAGELEYFTD KTTLFIVEMI FIGWAEGRRW ADIIKPGCVN TDPIFPNNKL TGTDVGYPGG
201: LWFDPLGWGS GSPDKIKELR TKEIKNGRLA MLAVMGAWFQ AIYTGTGPID NLFAHLADPG HATIFAAFTP K

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.