Factsheet for Os07t0577600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 19089317

plastid: 12481076
nucleus: 19621931

gfp PMID: 19089317 doi

CH Goh, S Jang, S Jung, HS Kim, HG Kang, YI Park, HJ Bae, CH Lee, G An

Environmental Biotechnology and Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 12481076 doi

L Zolla, S Rinalducci, AM Timperio, CG Huber

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy., Department of Environmental Sciences, University of Tuscia, Viterbo, Italy. zolla@unitus.it

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037285	Potato	extracellular, vacuole	55.51	93.59
KXG36552	Sorghum	plastid	90.87	90.87
Zm00001d006663_P001	Maize	plastid	89.73	90.77
TraesCS2B01G220100.1	Wheat	golgi, plastid	87.45	90.2
TraesCS2D01G200700.1	Wheat	plastid	87.45	90.2
TraesCS2A01G187200.1	Wheat	plastid	87.45	89.49
Zm00001d021906_P001	Maize	plastid	90.49	88.15
CDY43936	Canola	plastid	79.09	81.25
KRH06319	Soybean	nucleus, plastid	83.27	81.11
Bra014433.1-P	Field mustard	plastid	78.71	80.86
CDX89120	Canola	plastid	78.71	80.86
Solyc10g006230.2.1	Tomato	plastid	82.13	80.0
HORVU2Hr1G036960.4	Barley	plastid	85.55	79.79
AT3G61470.1	Thale cress	plastid	77.95	79.77
GSMUA_Achr6P20660_001	Banana	mitochondrion	61.22	78.54
Bra003451.1-P	Field mustard	plastid	77.19	78.38
VIT_01s0010g03620.t01	Wine grape	plastid	80.61	78.23
CDY51572	Canola	plastid	76.81	77.99
KRH47742	Soybean	nucleus	79.85	74.47
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	70.34	74.3
KRH68993	Soybean	plastid	79.47	67.86
AT5G28450.1	Thale cress	plastid	41.44	63.01
Os09t0439500-01	Rice	plastid	55.89	55.68
Os08t0435900-01	Rice	mitochondrion	46.39	50.0
Os02t0764500-01	Rice	plastid	42.59	42.91
Os02t0197600-01	Rice	plastid	41.44	40.52
Os06t0320500-01	Rice	plastid	35.36	38.59
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	34.98	36.51
Os01t0720500-01	Rice	plastid	36.12	35.85
Os01t0600900-02	Rice	plastid	35.36	35.63
Os09t0346500-04	Rice	plastid	34.6	34.34
Os03t0592500-01	Rice	extracellular	33.46	33.46
Os07t0558400-01	Rice	plasma membrane, plastid	36.88	33.45
Os07t0562700-01	Rice	extracellular, plastid	33.46	33.08
Os11t0242800-01	Rice	plastid	31.94	29.68
Os09t0296800-01	Rice	plastid	32.32	26.48

Protein Annotations

MapMan:1.1.4.1.2	Gene3D:1.10.3460.10	EntrezGene:4343709	EMBL:AK060987	EMBL:AK103966	EMBL:AK104127
EMBL:AK104177	EMBL:AK104283	EMBL:AK104608	EMBL:AK104651	EMBL:AK119176	ProteinID:BAC83072.1
ProteinID:BAF22004.1	ProteinID:BAT02303.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	ProteinID:EAZ40410.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628
GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409
InterPro:IPR023329	EnsemblPlantsGene:Os07g0577600	EnsemblPlants:Os07t0577600-01	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF57
UniProt:Q6ZL95	SUPFAM:SSF103511	UniParc:UPI00001BF1C8	RefSeq:XP_015647391.1	SEG:seg	:

Description

Similar to Type II chlorophyll a/b binding protein from photosystem I precursor. (Os07t0577600-01);Similar to Chlorophyll a-b binding protein. (Os07t0577600-02)

Coordinates

chr7:+:23357777..23359366

Molecular Weight (calculated)

28210.7 Da

IEP (calculated)

6.269

GRAVY (calculated)

0.011

Length

263 amino acids

Sequence
(BLAST)

001: MALVSASSST TAVAALPGAA RASSFLGGAG RSGRLLLRQA ESSSARASFA VRAAAPDRPI WFPGSTPPPW LDGSLPGDFG FDPLGLGSDP ESLRWNVQAE
101: LVHCRWAMLG AAGIFIPEFL TKIGILNTPS WYTAGEQQYF TDTTTLFIIE LILIGWAEGR RWADIIKPGC VNTDPIFPNN KLTGTDVGYP GGLWFDPLGW
201: GTGSPEKIKE LRTKEIKNGR LAMLAVMGAW FQAEYTGTGP IDNLFAHLAD PGHATIFQAF TPK

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.