Factsheet for Zm00001d006663_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36552	Sorghum	plastid	98.85	97.72
Zm00001d021906_P001	Maize	plastid	98.46	94.81
PGSC0003DMT400037285	Potato	extracellular, vacuole	55.0	91.67
Os07t0577600-01	Rice	plastid	90.77	89.73
TraesCS2B01G220100.1	Wheat	golgi, plastid	87.69	89.41
TraesCS2D01G200700.1	Wheat	plastid	87.31	89.02
TraesCS2A01G187200.1	Wheat	plastid	87.69	88.72
CDY43936	Canola	plastid	80.0	81.25
Bra014433.1-P	Field mustard	plastid	79.62	80.86
CDX89120	Canola	plastid	79.62	80.86
AT3G61470.1	Thale cress	plastid	79.23	80.16
HORVU2Hr1G036960.4	Barley	plastid	85.77	79.08
VIT_01s0010g03620.t01	Wine grape	plastid	81.92	78.6
KRH06319	Soybean	nucleus, plastid	81.54	78.52
Bra003451.1-P	Field mustard	plastid	78.08	78.38
CDY51572	Canola	plastid	77.69	77.99
Solyc10g006230.2.1	Tomato	plastid	80.77	77.78
GSMUA_Achr6P20660_001	Banana	mitochondrion	60.38	76.59
KRH47742	Soybean	nucleus	78.46	72.34
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	69.23	72.29
KRH68993	Soybean	plastid	77.69	65.58
AT5G28450.1	Thale cress	plastid	41.54	62.43
Zm00001d005814_P002	Maize	plastid	57.31	54.98
Zm00001d050403_P001	Maize	plastid	46.54	49.59
Zm00001d032197_P001	Maize	plastid	46.92	49.39
Zm00001d032051_P001	Maize	mitochondrion	16.54	47.78
Zm00001d018157_P001	Maize	plastid	41.92	40.52
Zm00001d015385_P001	Maize	plastid	35.38	37.55
Zm00001d046786_P001	Maize	plastid	37.31	36.33
Zm00001d001857_P001	Maize	plastid	34.62	35.57
Zm00001d009589_P001	Maize	plastid	36.15	35.47
Zm00001d026599_P001	Maize	plastid	33.46	35.08
Zm00001d039040_P001	Maize	plastid	35.77	34.96
Zm00001d044396_P001	Maize	plastid	35.38	34.85
Zm00001d044402_P001	Maize	plastid	35.0	34.47
Zm00001d044401_P001	Maize	plastid	35.0	34.47
Zm00001d044399_P001	Maize	plastid	35.0	34.47
Zm00001d011285_P001	Maize	plastid	35.0	34.47
Zm00001d021435_P001	Maize	plastid	34.23	33.97
Zm00001d021763_P001	Maize	plastid	36.92	32.99
Zm00001d033136_P001	Maize	plastid	32.69	32.69
Zm00001d033132_P001	Maize	plastid	32.69	32.69
Zm00001d006587_P001	Maize	plastid	36.54	32.65
Zm00001d040012_P001	Maize	plastid	16.54	31.62
Zm00001d021784_P001	Maize	plastid	32.31	31.23
Zm00001d048998_P001	Maize	plastid	31.92	29.33
Zm00001d006592_P001	Maize	plastid	13.85	29.27
Zm00001d007267_P002	Maize	plastid	31.54	28.98
Zm00001d011218_P001	Maize	plastid	18.08	28.66
Zm00001d013766_P001	Maize	plastid	14.62	26.39
Zm00001d020002_P002	Maize	plastid	31.92	26.35
Zm00001d024372_P001	Maize	plastid	21.54	23.63

Protein Annotations

MapMan:1.1.4.1.2	Gene3D:1.10.3460.10	EntrezGene:100191715	UniProt:B6TKL9	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:EU965534	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	ProteinID:ONM24678.1	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF57	SUPFAM:SSF103511	UniParc:UPI000182DC9C	EnsemblPlantsGene:Zm00001d006663	EnsemblPlants:Zm00001d006663_P001	EnsemblPlants:Zm00001d006663_T001
SEG:seg	:	:	:	:	:

Description

light harvesting complex A1 light harvesting complex A1

Coordinates

chr2:+:213805344..213811952

Molecular Weight (calculated)

28214.6 Da

IEP (calculated)

6.272

GRAVY (calculated)

-0.080

Length

260 amino acids

Sequence
(BLAST)

001: MALVSASSSS TTAVTALPRN GQRASSSFLG GKTLLRQAEA ARPSFAVRAA ADPNRPIWFP GSTPPPWLDG SLPGDFGFDP WGLGSDPESL RWNVQAELVH
101: CRWAMLGAAG IFIPEFLTKI GVLNTPFWYT AGEQQYFTDT TTLFIIELIL IGWAEGRRWA DIIKPGSVNT DPIFPSNKLT GTDVGYPGGL WFDPLGWGSG
201: SPEKIKELRT KEIKNGRLAM LAVMGAWFQA EYTGTGPIDN LFAHLADPGH ATIFQAFTPK

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.