Factsheet for Zm00001d005814_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35708	Sorghum	plastid	90.77	89.45
Os09t0439500-01	Rice	plastid	79.7	81.82
TraesCS5B01G210800.2	Wheat	cytosol, plastid	70.11	79.83
TraesCS5A01G213000.1	Wheat	plastid	78.97	78.39
TraesCS5D01G219100.1	Wheat	plastid	78.97	77.82
HORVU5Hr1G062240.1	Barley	plastid	79.34	75.44
KRH37524	Soybean	plastid	70.11	73.08
VIT_11s0016g00730.t01	Wine grape	plastid	69.74	72.97
KRH12566	Soybean	plastid	69.37	72.31
PGSC0003DMT400007514	Potato	plastid	68.27	71.15
Solyc12g009200.1.1	Tomato	nucleus, plastid	67.9	70.77
CDX83783	Canola	plastid	65.68	66.92
Bra016522.1-P	Field mustard	plastid	65.31	66.54
CDX96677	Canola	plastid	65.31	66.54
AT1G19150.1	Thale cress	plastid	66.05	66.3
GSMUA_Achr9P18200_001	Banana	plastid	31.73	62.77
Zm00001d006663_P001	Maize	plastid	54.98	57.31
Zm00001d021906_P001	Maize	plastid	54.98	55.19
Zm00001d032197_P001	Maize	plastid	41.33	45.34
Zm00001d050403_P001	Maize	plastid	39.85	44.26
Zm00001d032051_P001	Maize	mitochondrion	14.39	43.33
Zm00001d018157_P001	Maize	plastid	40.22	40.52
Zm00001d046786_P001	Maize	plastid	37.64	38.2
Zm00001d015385_P001	Maize	plastid	32.84	36.33
Zm00001d009589_P001	Maize	plastid	33.95	34.72
Zm00001d044396_P001	Maize	plastid	33.58	34.47
Zm00001d039040_P001	Maize	plastid	33.58	34.21
Zm00001d011285_P001	Maize	plastid	33.21	34.09
Zm00001d044402_P001	Maize	plastid	33.21	34.09
Zm00001d044401_P001	Maize	plastid	33.21	34.09
Zm00001d044399_P001	Maize	plastid	33.21	34.09
Zm00001d001857_P001	Maize	plastid	31.73	33.99
Zm00001d026599_P001	Maize	plastid	31.0	33.87
Zm00001d021435_P001	Maize	plastid	32.47	33.59
Zm00001d006587_P001	Maize	plastid	33.95	31.62
Zm00001d021763_P001	Maize	plastid	33.95	31.62
Zm00001d033132_P001	Maize	plastid	29.89	31.15
Zm00001d033136_P001	Maize	plastid	29.89	31.15
Zm00001d040012_P001	Maize	plastid	15.5	30.88
Zm00001d021784_P001	Maize	plastid	29.52	29.74
Zm00001d011218_P001	Maize	plastid	17.34	28.66
Zm00001d048998_P001	Maize	plastid	28.04	26.86
Zm00001d007267_P002	Maize	plastid	28.04	26.86
Zm00001d006592_P001	Maize	plastid	11.81	26.02
Zm00001d020002_P002	Maize	plastid	29.89	25.71
Zm00001d013766_P001	Maize	plastid	12.92	24.31
Zm00001d024372_P001	Maize	plastid	19.19	21.94

Protein Annotations

MapMan:1.1.4.1.6	Gene3D:1.10.3460.10	EntrezGene:100273427	UniProt:A0A096RWW7	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628
GO:GO:0009637	GO:GO:0009765	GO:GO:0009768	GO:GO:0009987	GO:GO:0010114	GO:GO:0010218
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	ProteinID:ONM22174.1	ProteinID:ONM22175.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF5
SUPFAM:SSF103511	UniParc:UPI0002214DAA	EnsemblPlantsGene:Zm00001d005814	EnsemblPlants:Zm00001d005814_P002	EnsemblPlants:Zm00001d005814_T002	:

Description

Photosystem I chlorophyll a/b-binding protein 6 chloroplastic

Coordinates

chr2:+:189518235..189520622

Molecular Weight (calculated)

29582.3 Da

IEP (calculated)

7.549

GRAVY (calculated)

-0.095

Length

271 amino acids

Sequence
(BLAST)

001: MALSSAGSFV ACSLRPSGAS IHAPRSPPHL KPGAAAASFT RTPQRRANAT KGGVSTVCEP LGPDRPIWFP GSSPPPWLDG SLPGDFGFDP LGLGSEPELL
101: RWFAQAELMH GRWAMLAAAG ILVPDLLARW GFIDAGFSWF DAGSREYFAD PWTLFVSQMA LMGWAEGRRW ADYLRPGCVD IEPRFPNRKN PVPDVGYPGG
201: LWFDWANWGR GSPEPVMVLR TKEIKNGRLA MLAFVGFWFQ AVYTGQGPID NLLAHLADPG HCNIFSAFTS H

Best Arabidopsis Sequence Match ( AT1G19150.1 )
(BLAST)

001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH

Arabidopsis Description

LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.