Factsheet for Zm00001d007267_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 20701693
plastid: 21196305
plastid: 22065420
extracellular: 22192489
plastid: 23198870
mitochondrion: 27297264

msms PMID: 20701693 doi

A Campos, PK Carvajal-Vallejos, E Villalobos, CF Franco, AM Almeida, AV Coelho, JM Torné, M Santos

Instituto de Tecnologia Química e Biológica (ITQB), Universidade Nova de Lisboa, Oeiras, Portugal.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048998_P001	Maize	plastid	98.23	98.23
Os11t0242800-01	Rice	plastid	92.23	92.23
TraesCS4D01G086400.1	Wheat	plastid	87.99	87.06
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	87.99	87.06
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	87.99	86.46
GSMUA_Achr6P12670_001	Banana	plasma membrane	79.86	81.0
Bra037913.1-P	Field mustard	plastid	79.15	79.72
AT4G10340.1	Thale cress	plastid	78.45	79.29
GSMUA_Achr3P02780_001	Banana	plastid	80.21	78.28
CDX90755	Canola	plastid	77.39	78.21
CDY60092	Canola	plastid	77.39	77.94
Bra000708.1-P	Field mustard	plastid	76.68	77.5
HORVU4Hr1G015260.2	Barley	plastid	78.8	77.43
PGSC0003DMT400068129	Potato	plastid	77.74	77.19
CDY05098	Canola	plastid	76.33	77.14
Solyc06g063370.2.1	Tomato	plastid	77.03	76.22
CDX86864	Canola	plastid	56.18	76.08
GSMUA_Achr10P...	Banana	plastid	75.62	74.31
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	79.15	55.72
Zm00001d011285_P001	Maize	plastid	43.46	46.59
Zm00001d021435_P001	Maize	plastid	42.4	45.8
Zm00001d009589_P001	Maize	plastid	42.76	45.66
Zm00001d039040_P001	Maize	plastid	42.76	45.49
Zm00001d044396_P001	Maize	plastid	42.4	45.45
Zm00001d033136_P001	Maize	plastid	41.7	45.38
Zm00001d033132_P001	Maize	plastid	41.7	45.38
Zm00001d044402_P001	Maize	plastid	42.05	45.08
Zm00001d044399_P001	Maize	plastid	42.05	45.08
Zm00001d044401_P001	Maize	plastid	42.05	45.08
Zm00001d021784_P001	Maize	plastid	39.93	42.01
KRH58809	Soybean	mitochondrion	44.17	39.43
Zm00001d013766_P001	Maize	plastid	18.73	36.81
Zm00001d006592_P001	Maize	plastid	15.55	35.77
Zm00001d020002_P002	Maize	plastid	38.87	34.92
Zm00001d046786_P001	Maize	plastid	31.1	32.96
Zm00001d006663_P001	Maize	plastid	28.98	31.54
Zm00001d015385_P001	Maize	plastid	27.21	31.43
Zm00001d018157_P001	Maize	plastid	29.68	31.23
Zm00001d021906_P001	Maize	plastid	29.68	31.11
Zm00001d021763_P001	Maize	plastid	31.8	30.93
Zm00001d050403_P001	Maize	plastid	26.5	30.74
Zm00001d006587_P001	Maize	plastid	31.1	30.24
Zm00001d032197_P001	Maize	plastid	25.8	29.55
Zm00001d032051_P001	Maize	mitochondrion	9.19	28.89
Zm00001d005814_P002	Maize	plastid	26.86	28.04
Zm00001d026599_P001	Maize	plastid	22.61	25.81
Zm00001d001857_P001	Maize	plastid	22.26	24.9
Zm00001d024372_P001	Maize	plastid	16.96	20.25
Zm00001d040012_P001	Maize	plastid	9.19	19.12
Zm00001d011218_P001	Maize	plastid	10.25	17.68

Protein Annotations

MapMan:1.1.1.1.3	Gene3D:1.10.3460.10	EntrezGene:542716	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	ProteinID:ONM26424.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF53	UniProt:Q41746
SUPFAM:SSF103511	EMBL:U23188	UniParc:UPI000009C8FF	EnsemblPlantsGene:Zm00001d007267	EnsemblPlants:Zm00001d007267_P002	EnsemblPlants:Zm00001d007267_T002
SEG:seg	:	:	:	:	:

Description

light harvesting chlorophyll a/b binding protein5 light harvesting chlorophyll a/b binding protein5

Coordinates

chr2:-:226141607..226143698

Molecular Weight (calculated)

30172.1 Da

IEP (calculated)

5.390

GRAVY (calculated)

-0.008

Length

283 amino acids

Sequence
(BLAST)

001: MAALAPSKIL GTKLNFAGSS RYATAAPTAG AQKIVSLFSK KPAQKPKPSA VSSSSPDISD ELAKWYGPDR RIYLPDGLLD RSEVPEYLTG EVPGDYGYDP
101: FGLGKKPEDF AKYQAYELIH ARWAMLGAAG AVIPEACNKF GANCGPEAVW FKTGALLLDG NTLSYFGNSI PINLVVAVIA EVVLVGGAEY YRIINGLDLE
201: DKLHPGGPFD PLGLASDPDQ AAILKVKEIK NGRLAMFSMF AFFIQAYVTG EGPVENLAKH LSDPFGNNLL TVISGAAERT PSL

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.