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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 5
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, peroxisome, plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
PTS1:peroxisome
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
plasma membrane: 18557835
vacuole: 18557835
nucleus: 19621931
cytosol: 19685898
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19685898 doi
KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d048998_P001 Maize plastid 92.23 92.23
Zm00001d007267_P002 Maize plastid 92.23 92.23
EES09551 Sorghum plastid 91.87 92.2
TraesCS4D01G086400.1 Wheat plastid 90.46 89.51
TraesCS4B01G089500.1 Wheat mitochondrion, plastid 90.46 89.51
TraesCS4A01G226900.2 Wheat mitochondrion, plastid 90.46 88.89
GSMUA_Achr6P12670_001 Banana plasma membrane 81.27 82.44
GSMUA_Achr3P02780_001 Banana plastid 82.69 80.69
HORVU4Hr1G015260.2 Barley plastid 81.63 80.21
AT4G10340.1 Thale cress plastid 79.15 80.0
CDX90755 Canola plastid 79.15 80.0
CDY60092 Canola plastid 79.15 79.72
Bra000708.1-P Field mustard plastid 78.45 79.29
Bra037913.1-P Field mustard plastid 78.45 79.0
CDY05098 Canola plastid 78.09 78.93
Solyc06g063370.2.1 Tomato plastid 79.51 78.67
PGSC0003DMT400068129 Potato plastid 78.8 78.25
GSMUA_Achr10P... Banana plastid 78.09 76.74
CDX86864 Canola plastid 55.48 75.12
VIT_18s0089g01170.t01 Wine grape cytosol, extracellular, plastid 81.98 57.71
Os01t0600900-02 Rice plastid 42.4 45.98
Os09t0346500-04 Rice plastid 42.4 45.28
Os01t0720500-01 Rice plastid 42.05 44.91
Os03t0592500-01 Rice extracellular 40.99 44.11
Os07t0562700-01 Rice extracellular, plastid 40.99 43.61
KRH58809 Soybean mitochondrion 45.23 40.38
Os02t0764500-01 Rice plastid 30.04 32.57
Os09t0296800-01 Rice plastid 36.4 32.09
Os07t0577600-01 Rice plastid 29.68 31.94
Os06t0320500-01 Rice plastid 26.86 31.54
Os07t0558400-01 Rice plasma membrane, plastid 31.8 31.03
Os02t0197600-01 Rice plastid 28.62 30.11
Os09t0439500-01 Rice plastid 27.56 29.55
Os08t0435900-01 Rice mitochondrion 25.09 29.1
Os04t0457000-01 Rice extracellular, plasma membrane, plastid 22.97 25.79
Protein Annotations
MapMan:1.1.1.1.3Gene3D:1.10.3460.10EntrezGene:4350176ProteinID:AAX95978.1ProteinID:ABA92338.2EMBL:AK061295
EMBL:AK098872ProteinID:BAF27956.1ProteinID:BAT13392.1InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sf
ProteinID:EAZ17957.1GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006091GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009416
GO:GO:0009507GO:GO:0009522GO:GO:0009523GO:GO:0009535GO:GO:0009536GO:GO:0009579
GO:GO:0009628GO:GO:0009765GO:GO:0009768GO:GO:0009941GO:GO:0009987GO:GO:0010287
GO:GO:0015979GO:GO:0016020GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0019538
GO:GO:0031409InterPro:IPR023329EnsemblPlantsGene:Os11g0242800EnsemblPlants:Os11t0242800-01PFAM:PF00504PANTHER:PTHR21649
PANTHER:PTHR21649:SF53UniProt:Q53N83SUPFAM:SSF103511UniParc:UPI000050934CRefSeq:XP_015617156.1SEG:seg
Description
light-harvesting protein ASCAB9-A, PSII CP26, PSII Lhcb5Similar to ASCAB9-A (ASCAB9-B) (Fragment). (Os11t0242800-01)
Coordinates
chr11:+:7659701..7662180
Molecular Weight (calculated)
30285.3 Da
IEP (calculated)
5.390
GRAVY (calculated)
-0.046
Length
283 amino acids
Sequence
(BLAST)
001: MAALAPSKML GTRLNFAGSS RYATAAPTTG AQKIVSLFSK KPAPKPKPAA VTSSSPDIGD ELAKWYGPDR RIFLPEGLLD RSEVPDYLNG EVPGDYGYDP
101: FGLSKKPEDF SKYQAYELIH ARWAMLGAAG FIIPEACNKF GANCGPEAVW FKTGALLLDG NTLNYFGNSI PINLIVAVAA EVVLVGGAEY YRIINGLDLE
201: DKLHPGGPFD PLGLASDPDQ AALLKVKEIK NGRLAMFSML GFFIQAYVTG EGPVENLSKH LSDPFGNNLL TVISGAAERT PSL
Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)
001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL
Arabidopsis Description
LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.