Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 5
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plasma membrane:
18557835
vacuole: 18557835 nucleus: 19621931 cytosol: 19685898 plastid: 21433289 extracellular: 23159799 plasma membrane: 27800704 plastid: 27992503 extracellular: 28232208 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
19685898
doi
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
21433289
doi
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d048998_P001 | Maize | plastid | 92.23 | 92.23 |
Zm00001d007267_P002 | Maize | plastid | 92.23 | 92.23 |
EES09551 | Sorghum | plastid | 91.87 | 92.2 |
TraesCS4D01G086400.1 | Wheat | plastid | 90.46 | 89.51 |
TraesCS4B01G089500.1 | Wheat | mitochondrion, plastid | 90.46 | 89.51 |
TraesCS4A01G226900.2 | Wheat | mitochondrion, plastid | 90.46 | 88.89 |
GSMUA_Achr6P12670_001 | Banana | plasma membrane | 81.27 | 82.44 |
GSMUA_Achr3P02780_001 | Banana | plastid | 82.69 | 80.69 |
HORVU4Hr1G015260.2 | Barley | plastid | 81.63 | 80.21 |
AT4G10340.1 | Thale cress | plastid | 79.15 | 80.0 |
CDX90755 | Canola | plastid | 79.15 | 80.0 |
CDY60092 | Canola | plastid | 79.15 | 79.72 |
Bra000708.1-P | Field mustard | plastid | 78.45 | 79.29 |
Bra037913.1-P | Field mustard | plastid | 78.45 | 79.0 |
CDY05098 | Canola | plastid | 78.09 | 78.93 |
Solyc06g063370.2.1 | Tomato | plastid | 79.51 | 78.67 |
PGSC0003DMT400068129 | Potato | plastid | 78.8 | 78.25 |
GSMUA_Achr10P... | Banana | plastid | 78.09 | 76.74 |
CDX86864 | Canola | plastid | 55.48 | 75.12 |
VIT_18s0089g01170.t01 | Wine grape | cytosol, extracellular, plastid | 81.98 | 57.71 |
Os01t0600900-02 | Rice | plastid | 42.4 | 45.98 |
Os09t0346500-04 | Rice | plastid | 42.4 | 45.28 |
Os01t0720500-01 | Rice | plastid | 42.05 | 44.91 |
Os03t0592500-01 | Rice | extracellular | 40.99 | 44.11 |
Os07t0562700-01 | Rice | extracellular, plastid | 40.99 | 43.61 |
KRH58809 | Soybean | mitochondrion | 45.23 | 40.38 |
Os02t0764500-01 | Rice | plastid | 30.04 | 32.57 |
Os09t0296800-01 | Rice | plastid | 36.4 | 32.09 |
Os07t0577600-01 | Rice | plastid | 29.68 | 31.94 |
Os06t0320500-01 | Rice | plastid | 26.86 | 31.54 |
Os07t0558400-01 | Rice | plasma membrane, plastid | 31.8 | 31.03 |
Os02t0197600-01 | Rice | plastid | 28.62 | 30.11 |
Os09t0439500-01 | Rice | plastid | 27.56 | 29.55 |
Os08t0435900-01 | Rice | mitochondrion | 25.09 | 29.1 |
Os04t0457000-01 | Rice | extracellular, plasma membrane, plastid | 22.97 | 25.79 |
Protein Annotations
MapMan:1.1.1.1.3 | Gene3D:1.10.3460.10 | EntrezGene:4350176 | ProteinID:AAX95978.1 | ProteinID:ABA92338.2 | EMBL:AK061295 |
EMBL:AK098872 | ProteinID:BAF27956.1 | ProteinID:BAT13392.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf |
ProteinID:EAZ17957.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009416 |
GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
GO:GO:0009628 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010287 |
GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
GO:GO:0031409 | InterPro:IPR023329 | EnsemblPlantsGene:Os11g0242800 | EnsemblPlants:Os11t0242800-01 | PFAM:PF00504 | PANTHER:PTHR21649 |
PANTHER:PTHR21649:SF53 | UniProt:Q53N83 | SUPFAM:SSF103511 | UniParc:UPI000050934C | RefSeq:XP_015617156.1 | SEG:seg |
Description
light-harvesting protein ASCAB9-A, PSII CP26, PSII Lhcb5Similar to ASCAB9-A (ASCAB9-B) (Fragment). (Os11t0242800-01)
Coordinates
chr11:+:7659701..7662180
Molecular Weight (calculated)
30285.3 Da
IEP (calculated)
5.390
GRAVY (calculated)
-0.046
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALAPSKML GTRLNFAGSS RYATAAPTTG AQKIVSLFSK KPAPKPKPAA VTSSSPDIGD ELAKWYGPDR RIFLPEGLLD RSEVPDYLNG EVPGDYGYDP
101: FGLSKKPEDF SKYQAYELIH ARWAMLGAAG FIIPEACNKF GANCGPEAVW FKTGALLLDG NTLNYFGNSI PINLIVAVAA EVVLVGGAEY YRIINGLDLE
201: DKLHPGGPFD PLGLASDPDQ AALLKVKEIK NGRLAMFSML GFFIQAYVTG EGPVENLSKH LSDPFGNNLL TVISGAAERT PSL
101: FGLSKKPEDF SKYQAYELIH ARWAMLGAAG FIIPEACNKF GANCGPEAVW FKTGALLLDG NTLNYFGNSI PINLIVAVAA EVVLVGGAEY YRIINGLDLE
201: DKLHPGGPFD PLGLASDPDQ AALLKVKEIK NGRLAMFSML GFFIQAYVTG EGPVENLSKH LSDPFGNNLL TVISGAAERT PSL
001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL
Arabidopsis Description
LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.