Factsheet for Os01t0720500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 19089317

cytosol: 19685898
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704
extracellular: 28232208

gfp PMID: 19089317 doi

CH Goh, S Jang, S Jung, HS Kim, HG Kang, YI Park, HJ Bae, CH Lee, G An

Environmental Biotechnology and Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	58.87	97.5
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	58.87	97.5
Os01t0600900-02	Rice	plastid	95.85	97.32
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	47.92	95.49
EES01022	Sorghum	plastid	93.58	93.58
Zm00001d044402_P001	Maize	plastid	93.21	93.56
Zm00001d044401_P001	Maize	plastid	93.21	93.56
Zm00001d044399_P001	Maize	plastid	93.21	93.56
Zm00001d044396_P001	Maize	plastid	92.83	93.18
Zm00001d011285_P001	Maize	plastid	92.83	93.18
OQU87124	Sorghum	plastid	92.83	93.18
TraesCS1B01G317500.1	Wheat	plastid	53.21	92.16
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	92.83	92.13
TraesCS5D01G464700.1	Wheat	plastid	92.45	92.11
Os09t0346500-04	Rice	plastid	92.08	92.08
HORVU1Hr1G078380.1	Barley	plastid	91.32	91.32
TraesCS1D01G374900.1	Wheat	plastid	91.32	91.32
TraesCS5A01G350600.1	Wheat	plastid	91.32	91.32
TraesCS5D01G357600.1	Wheat	plastid	91.32	91.32
HORVU5Hr1G109250.1	Barley	plastid	91.32	90.98
TraesCS5A01G454200.1	Wheat	plastid	91.32	90.98
HORVU7Hr1G040370.1	Barley	plastid	91.32	90.98
TraesCSU01G167700.1	Wheat	plastid	90.94	90.94
TraesCS1D01G375100.1	Wheat	plastid	90.94	90.94
TraesCS5D01G464900.1	Wheat	plastid	90.94	90.6
TraesCS5A01G454300.1	Wheat	plastid	90.94	90.6
HORVU5Hr1G087250.1	Barley	plastid	90.94	90.6
HORVU5Hr1G124160.1	Barley	plastid	90.94	90.6
HORVU6Hr1G091660.1	Barley	plastid	90.57	90.23
TraesCS7D01G199400.1	Wheat	plastid	90.57	90.23
HORVU1Hr1G088880.1	Barley	plastid	90.57	90.23
TraesCS1A01G403300.1	Wheat	plastid	90.57	90.23
TraesCS7A01G238400.1	Wheat	plastid	90.19	89.85
TraesCS6D01G088800.1	Wheat	plastid	90.19	89.85
TraesCS6A01G094300.1	Wheat	plastid	90.19	89.85
TraesCS1D01G411300.1	Wheat	plastid	90.19	89.85
HORVU6Hr1G016880.1	Barley	plastid	90.19	89.85
VIT_10s0003g02890.t01	Wine grape	plastid	89.43	89.77
TraesCS1D01G375000.1	Wheat	plastid	80.75	89.54
TraesCS5D01G464800.1	Wheat	plastid	89.81	89.47
TraesCS1D01G411600.1	Wheat	plastid	89.81	89.47
TraesCS6A01G094600.1	Wheat	plastid	86.42	89.45
TraesCSU01G250000.1	Wheat	plastid	89.43	89.1
VIT_10s0003g02900.t01	Wine grape	plastid	88.68	89.02
VIT_19s0014g00160.t01	Wine grape	plastid	89.43	88.76
TraesCS6D01G088600.1	Wheat	plastid	89.06	88.72
TraesCS1A01G403800.1	Wheat	plastid	89.06	88.72
TraesCS6A01G093700.1	Wheat	plastid	89.06	88.72
TraesCS6A01G094100.1	Wheat	plastid	89.06	88.72
HORVU1Hr1G088900.1	Barley	plastid	88.68	88.35
HORVU6Hr1G016850.1	Barley	plastid	88.3	87.97
VIT_07s0005g02220.t01	Wine grape	plastid	87.17	87.83
TraesCS7D01G199500.1	Wheat	plastid	87.92	87.59
TraesCS6D01G088700.1	Wheat	plastid	75.47	86.96
GSMUA_Achr4P07890_001	Banana	plastid	52.08	86.79
VIT_12s0028g00320.t01	Wine grape	plastid	88.3	86.67
TraesCS7A01G237100.1	Wheat	plastid	86.79	86.47
HORVU6Hr1G091650.1	Barley	plastid	90.57	84.51
HORVU1Hr1G088870.2	Barley	plastid	90.57	83.05
HORVU6Hr1G016890.6	Barley	plastid	89.43	81.72
HORVU1Hr1G088920.3	Barley	plastid	90.57	81.08
TraesCS6A01G094500.1	Wheat	plastid	89.81	78.03
HORVU7Hr1G040380.1	Barley	plastid	90.94	77.24
HORVU1Hr1G089180.1	Barley	plastid	89.81	75.08
Os03t0592500-01	Rice	extracellular	74.34	74.9
HORVU5Hr1G109260.4	Barley	plastid	91.32	74.69
HORVU5Hr1G109360.1	Barley	plastid	91.32	74.69
TraesCS1D01G375200.1	Wheat	plastid	43.4	74.68
TraesCS6A01G094200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	90.19	73.09
TraesCS6A01G094400.1	Wheat	plastid	90.94	72.37
Os07t0562700-01	Rice	extracellular, plastid	67.55	67.29
KXG33266	Sorghum	extracellular	50.19	57.58
Os11t0242800-01	Rice	plastid	44.91	42.05
Os09t0296800-01	Rice	plastid	44.91	37.07
Os06t0320500-01	Rice	plastid	33.21	36.51
Os07t0577600-01	Rice	plastid	35.85	36.12
Os09t0439500-01	Rice	plastid	33.21	33.33
Os02t0764500-01	Rice	plastid	32.45	32.95
Os07t0558400-01	Rice	plasma membrane, plastid	35.47	32.41
Os02t0197600-01	Rice	plastid	32.08	31.6
Os08t0435900-01	Rice	mitochondrion	29.06	31.56
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	27.92	29.37

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:4324705	EMBL:AK058289	EMBL:AK103946	EMBL:AK104176
ProteinID:BAB84417.1	ProteinID:BAF06004.1	ProteinID:BAS74074.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
ProteinID:EAZ13361.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0031409	InterPro:IPR023329	EnsemblPlantsGene:Os01g0720500	EnsemblPlants:Os01t0720500-01	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF56	UniProt:Q8W0E6	SUPFAM:SSF103511	UniParc:UPI00000A7F08	RefSeq:XP_015648289.1	SEG:seg

Description

Similar to Type I chlorophyll a/b-binding protein b (Fragment). (Os01t0720500-01);Non-protein coding transcript. (Os01t0720500-02)

Coordinates

chr1:+:30030998..30032054

Molecular Weight (calculated)

27903.4 Da

IEP (calculated)

5.085

GRAVY (calculated)

0.091

Length

265 amino acids

Sequence
(BLAST)

001: MAASTMALSS PAALAGKAVA NAKVFGEGRV TMRKSAAKPK PAAASGSPWY GADRVLYLGP LSGEPPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LIHAQSILAI WGCQVVLMGA VEGYRVAGGP LGEVVDPLYP GGSFDPLGLA
201: DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAYATN FVPGK

Best Arabidopsis Sequence Match ( AT2G34430.1 )
(BLAST)

001: MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK

Arabidopsis Description

LHB1B1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39142]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.