CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01022	Sorghum	plastid	98.86	98.49
Zm00001d044402_P001	Maize	plastid	96.21	96.21
Zm00001d044401_P001	Maize	plastid	96.21	96.21
Zm00001d044399_P001	Maize	plastid	96.21	96.21
EER97145	Sorghum	extracellular, vacuole	62.12	95.91
Zm00001d044396_P001	Maize	plastid	95.83	95.83
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	47.73	94.74
Os01t0720500-01	Rice	plastid	93.18	92.83
EER97143	Sorghum	plastid	90.15	90.84
HORVU5Hr1G124160.1	Barley	plastid	91.29	90.6
HORVU5Hr1G087250.1	Barley	plastid	91.29	90.6
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	91.29	90.26
TraesCS5A01G350600.1	Wheat	plastid	90.53	90.19
EES18693	Sorghum	plastid	90.53	90.19
TraesCS5D01G357600.1	Wheat	plastid	90.53	90.19
TraesCS5B01G353200.1	Wheat	plastid	90.15	89.81
HORVU1Hr1G088880.1	Barley	plastid	88.64	87.97
TraesCS1B01G432700.1	Wheat	plastid	88.64	87.97
TraesCS1A01G403300.1	Wheat	plastid	88.64	87.97
TraesCS1D01G411300.1	Wheat	plastid	88.26	87.59
VIT_07s0005g02220.t01	Wine grape	plastid	87.12	87.45
VIT_19s0014g00160.t01	Wine grape	plastid	88.26	87.27
VIT_10s0003g02900.t01	Wine grape	plastid	86.36	86.36
VIT_10s0003g02890.t01	Wine grape	plastid	86.36	86.36
VIT_12s0028g00320.t01	Wine grape	plastid	85.23	83.33
GSMUA_Achr4P07890_001	Banana	plastid	50.0	83.02
HORVU1Hr1G088870.2	Barley	plastid	88.64	80.97
PGSC0003DMT400034902	Potato	plastid	39.39	79.39
EER93861	Sorghum	plastid	75.0	75.57
OQU90095	Sorghum	plastid	67.05	66.04
KXG33266	Sorghum	extracellular	49.62	56.71
EES09551	Sorghum	plastid	46.21	43.26
EER96508	Sorghum	plastid	43.94	36.94
EES04597	Sorghum	plastid	33.71	36.33
KXG36552	Sorghum	plastid	33.71	33.84
KXG20345	Sorghum	plastid	33.33	33.21
EES07574	Sorghum	plastid	32.95	32.71
KXG35708	Sorghum	plastid	32.58	31.27
KXG25214	Sorghum	plastid	29.55	31.08
EER99537	Sorghum	plastid	33.71	30.9
OQU82564	Sorghum	plastid	26.52	27.45

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	UniProt:A0A1W0VYB5	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	EnsemblPlants:OQU87124	ProteinID:OQU87124	ProteinID:OQU87124.1	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF56	EnsemblPlantsGene:SORBI_3003G209800	SUPFAM:SSF103511	UniParc:UPI0009DC9036	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:54181277..54182077

Molecular Weight (calculated)

28041.6 Da

IEP (calculated)

5.098

GRAVY (calculated)

0.047

Length

264 amino acids

Sequence
(BLAST)

001: MAAAATMALT SRALVGKPAT TSTRDVFGEG RITMRKTAAK PKPAASGSPW YGADRVLYLG PFSGEPPSYL TGEFPGDYGW DTAGLSADPE TFAKNRELEV
101: IHCRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS EGGLDYLGNP SLIHAQSILA IWACQVVLMG AVEGYRVAGG PLGEVVDPLY PGGSFDPLGL
201: ADDPEAFAEL KVKEIKNGRL AMFSMFGFFA IVTGKGPLEN LADHLADPVN NNAWAYATNF VPGK

Best Arabidopsis Sequence Match ( AT2G34420.1 )
(BLAST)

001: MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK

Arabidopsis Description

LHB1B2Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39141]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.