Factsheet for Zm00001d044396_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 1
plastid 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044401_P001	Maize	plastid	98.86	98.86
Zm00001d044402_P001	Maize	plastid	98.86	98.86
Zm00001d044399_P001	Maize	plastid	98.86	98.86
Zm00001d011285_P001	Maize	plastid	96.59	96.59
OQU87124	Sorghum	plastid	95.83	95.83
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	47.35	93.98
Os01t0720500-01	Rice	plastid	93.18	92.83
TraesCS5D01G357600.1	Wheat	plastid	91.29	90.94
TraesCS5A01G350600.1	Wheat	plastid	91.29	90.94
TraesCS5B01G353200.1	Wheat	plastid	90.91	90.57
HORVU5Hr1G087250.1	Barley	plastid	90.91	90.23
HORVU5Hr1G124160.1	Barley	plastid	90.91	90.23
Zm00001d009589_P001	Maize	plastid	90.15	89.81
Zm00001d021435_P001	Maize	plastid	89.02	89.69
Zm00001d039040_P001	Maize	plastid	89.77	89.1
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	89.39	88.39
TraesCS1D01G411300.1	Wheat	plastid	89.02	88.35
TraesCS1B01G432700.1	Wheat	plastid	89.02	88.35
TraesCS1A01G403300.1	Wheat	plastid	89.02	88.35
HORVU1Hr1G088880.1	Barley	plastid	89.02	88.35
VIT_07s0005g02220.t01	Wine grape	plastid	86.74	87.07
VIT_19s0014g00160.t01	Wine grape	plastid	87.5	86.52
VIT_10s0003g02890.t01	Wine grape	plastid	86.36	86.36
VIT_10s0003g02900.t01	Wine grape	plastid	86.36	86.36
VIT_12s0028g00320.t01	Wine grape	plastid	84.85	82.96
GSMUA_Achr4P07890_001	Banana	plastid	49.24	81.76
HORVU1Hr1G088870.2	Barley	plastid	89.02	81.31
PGSC0003DMT400034902	Potato	plastid	38.26	77.1
Zm00001d033136_P001	Maize	plastid	75.38	76.54
Zm00001d033132_P001	Maize	plastid	75.38	76.54
Zm00001d013766_P001	Maize	plastid	36.36	66.67
Zm00001d021784_P001	Maize	plastid	67.8	66.54
Zm00001d006592_P001	Maize	plastid	25.76	55.28
Zm00001d007267_P002	Maize	plastid	45.45	42.4
Zm00001d048998_P001	Maize	plastid	45.08	42.05
Zm00001d020002_P002	Maize	plastid	44.7	37.46
Zm00001d006663_P001	Maize	plastid	34.85	35.38
Zm00001d015385_P001	Maize	plastid	32.58	35.1
Zm00001d018157_P001	Maize	plastid	34.85	34.2
Zm00001d046786_P001	Maize	plastid	34.47	34.08
Zm00001d021906_P001	Maize	plastid	34.85	34.07
Zm00001d005814_P002	Maize	plastid	34.47	33.58
Zm00001d032197_P001	Maize	plastid	30.3	32.39
Zm00001d050403_P001	Maize	plastid	29.55	31.97
Zm00001d021763_P001	Maize	plastid	34.85	31.62
Zm00001d032051_P001	Maize	mitochondrion	10.61	31.11
Zm00001d006587_P001	Maize	plastid	34.09	30.93
Zm00001d001857_P001	Maize	plastid	26.89	28.06
Zm00001d026599_P001	Maize	plastid	25.38	27.02
Zm00001d040012_P001	Maize	plastid	12.12	23.53
Zm00001d024372_P001	Maize	plastid	18.94	21.1
Zm00001d011218_P001	Maize	plastid	12.12	19.51

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:103651575	UniProt:A0A1D6NLF1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	InterPro:IPR023329	ProteinID:ONM41052.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56
SUPFAM:SSF103511	UniParc:UPI0002215289	EnsemblPlantsGene:Zm00001d044396	EnsemblPlants:Zm00001d044396_P001	EnsemblPlants:Zm00001d044396_T001	SEG:seg

Description

Chlorophyll a-b binding protein 48%2C chloroplastic

Coordinates

chr3:+:227100368..227101162

Molecular Weight (calculated)

27976.5 Da

IEP (calculated)

5.341

GRAVY (calculated)

0.066

Length

264 amino acids

Sequence
(BLAST)

001: MAAATMAITS RALVGKPAAG TRDVFGEGRI TMRKTAAKPK PAASGSPWYG ADRVLYLGPL SGSPPSYLTG EFPGDYGWDT AGLSADPETF AKNRELEVIH
101: CRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSEG GLDYLGNPSL VHAQSILAIW ACQVVLMGAV EGYRVAGGPL GEVVDPLYPG GSFDPLGLAD
201: DPEAFAELKV KEIKNGRLAM FSMFGFFVQA IVTGKGPIEN LADHLTDPVN NNAWAYATNF VPGK

Best Arabidopsis Sequence Match ( AT1G29930.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.3Chlorophyll a-b binding protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P04778]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.