Factsheet for Zm00001d013766_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006592_P001	Maize	plastid	43.75	51.22
EER93861	Sorghum	plastid	77.78	42.75
Zm00001d033132_P001	Maize	plastid	77.08	42.69
Zm00001d033136_P001	Maize	plastid	77.08	42.69
Os03t0592500-01	Rice	extracellular	77.08	42.21
TraesCS5A01G322500.1	Wheat	plastid	75.69	41.44
TraesCS5D01G329200.1	Wheat	plastid	75.69	41.44
TraesCS5B01G322900.1	Wheat	plastid	75.69	41.44
GSMUA_Achr4P33040_001	Banana	plastid, unclear	74.31	40.53
VIT_12s0057g00630.t01	Wine grape	plastid	73.61	40.0
KRH14122	Soybean	nucleus, plastid	72.92	39.62
PGSC0003DMT400015740	Potato	plastid	72.92	39.62
CDX93077	Canola	plastid	72.22	39.25
Bra013183.1-P	Field mustard	plastid	72.22	39.25
CDY15050	Canola	plastid	72.22	39.25
KRH74003	Soybean	nucleus, plastid	72.22	39.25
PGSC0003DMT400010985	Potato	plastid	72.22	39.25
Solyc07g047850.2.1	Tomato	plastid	72.22	39.25
AT2G05070.1	Thale cress	plastid	71.53	38.87
Solyc12g006140.1.1	Tomato	plastid	71.53	38.87
CDY20039	Canola	plastid	70.83	38.49
Bra039070.1-P	Field mustard	plastid	70.83	38.49
CDY00149	Canola	plastid	70.83	38.35
Bra025297.1-P	Field mustard	plastid	70.83	38.35
CDX83726	Canola	plastid	70.83	38.35
CDY49770	Canola	plastid	70.83	38.35
CDY13732	Canola	plastid	70.83	38.35
CDY03989	Canola	plastid	70.14	37.97
Zm00001d039040_P001	Maize	plastid	68.75	37.22
Zm00001d011285_P001	Maize	plastid	68.06	37.12
Zm00001d021435_P001	Maize	plastid	67.36	37.02
Zm00001d009589_P001	Maize	plastid	68.06	36.98
Bra033022.1-P	Field mustard	plastid	65.97	36.82
Zm00001d044396_P001	Maize	plastid	66.67	36.36
Zm00001d044399_P001	Maize	plastid	66.67	36.36
Zm00001d044402_P001	Maize	plastid	66.67	36.36
Zm00001d044401_P001	Maize	plastid	66.67	36.36
Zm00001d021784_P001	Maize	plastid	65.28	34.94
AT3G27690.2	Thale cress	golgi, plastid	71.53	34.56
AT2G05100.2	Thale cress	plastid	72.22	32.81
HORVU5Hr1G082420.1	Barley	plastid	75.69	31.78
Zm00001d032051_P001	Maize	mitochondrion	15.97	25.56
Zm00001d007267_P002	Maize	plastid	36.81	18.73
Zm00001d048998_P001	Maize	plastid	36.81	18.73
Zm00001d040012_P001	Maize	plastid	17.36	18.38
Zm00001d020002_P002	Maize	plastid	34.72	15.87
Zm00001d011218_P001	Maize	plastid	18.06	15.85
Zm00001d046786_P001	Maize	plastid	28.47	15.36
Zm00001d006663_P001	Maize	plastid	26.39	14.62
Zm00001d050403_P001	Maize	plastid	24.31	14.34
Zm00001d032197_P001	Maize	plastid	24.31	14.17
Zm00001d021906_P001	Maize	plastid	26.39	14.07
Zm00001d021763_P001	Maize	plastid	27.78	13.75
Zm00001d006587_P001	Maize	plastid	27.78	13.75
Zm00001d005814_P002	Maize	plastid	24.31	12.92
Zm00001d001857_P001	Maize	plastid	21.53	12.25
Zm00001d015385_P001	Maize	plastid	20.83	12.24
Zm00001d026599_P001	Maize	plastid	20.83	12.1
Zm00001d018157_P001	Maize	plastid	20.83	11.15
Zm00001d024372_P001	Maize	plastid	6.25	3.8

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	UniProt:A0A1D6GLZ4	ProteinID:AQK64330.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	SUPFAM:SSF103511
UniParc:UPI000221B1F7	EnsemblPlantsGene:Zm00001d013766	EnsemblPlants:Zm00001d013766_P001	EnsemblPlants:Zm00001d013766_T001	:	:

Description

photosystem II light harvesting complex gene 2.1

Coordinates

chr5:-:19722698..19723327

Molecular Weight (calculated)

15869.7 Da

IEP (calculated)

4.856

GRAVY (calculated)

-0.097

Length

144 amino acids

Sequence
(BLAST)

001: MATSALQQTT SFLGQALVSR PAGVDAGSRI TMRRTVKSAP QSIWYDPDRP KYLAPFSEQT SSYLTGEFPG DYGWDTAGLS ADHETFARNR ELEVIHSWWA
101: MLGALGCVFP EVLAKNDVKF GEVVWFKAGA QIFSEGGLDY LVLL

Best Arabidopsis Sequence Match ( AT2G05070.1 )
(BLAST)

001: MATSAIQQSS FAGQTALKPS SDLIQKVGVL GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHLADPV ANNAWSYATN FVPGK

Arabidopsis Description

LHCB2.2Chlorophyll a-b binding protein 2.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.