Factsheet for Zm00001d018157_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07574	Sorghum	plastid	91.82	92.86
Os02t0764500-01	Rice	plastid	80.67	83.14
TraesCS6B01G350500.1	Wheat	plastid	75.84	79.38
TraesCS6D01G299200.1	Wheat	plastid	74.35	78.74
TraesCS6A01G319700.1	Wheat	plastid	74.35	78.74
TraesCS6B01G312900.1	Wheat	plastid	39.03	72.41
VIT_18s0001g10550.t01	Wine grape	plastid	66.54	67.8
GSMUA_Achr7P13020_001	Banana	plastid	66.17	65.44
CDY43213	Canola	mitochondrion, plastid	62.08	64.73
Bra014048.1-P	Field mustard	mitochondrion, plastid	61.71	64.34
CDY17055	Canola	mitochondrion, plastid	61.71	64.34
AT1G45474.2	Thale cress	mitochondrion	60.97	64.06
Solyc07g022900.2.1	Tomato	plastid	61.71	63.36
KRH51989	Soybean	nucleus	63.94	60.35
PGSC0003DMT400011381	Potato	plastid	53.16	53.76
KRH61286	Soybean	mitochondrion	37.92	46.58
Zm00001d050403_P001	Maize	plastid	40.15	44.26
Zm00001d032197_P001	Maize	plastid	40.52	44.13
Zm00001d032051_P001	Maize	mitochondrion	14.5	43.33
Zm00001d006663_P001	Maize	plastid	40.52	41.92
Zm00001d021906_P001	Maize	plastid	40.89	40.74
Zm00001d005814_P002	Maize	plastid	40.52	40.22
Zm00001d046786_P001	Maize	plastid	38.66	38.95
Zm00001d026599_P001	Maize	plastid	35.69	38.71
Zm00001d001857_P001	Maize	plastid	35.32	37.55
Zm00001d044396_P001	Maize	plastid	34.2	34.85
Zm00001d044399_P001	Maize	plastid	33.46	34.09
Zm00001d044401_P001	Maize	plastid	33.46	34.09
Zm00001d044402_P001	Maize	plastid	33.46	34.09
Zm00001d011285_P001	Maize	plastid	33.46	34.09
Zm00001d009589_P001	Maize	plastid	33.09	33.58
Zm00001d039040_P001	Maize	plastid	33.09	33.46
Zm00001d021435_P001	Maize	plastid	31.97	32.82
Zm00001d015385_P001	Maize	plastid	29.74	32.65
Zm00001d033132_P001	Maize	plastid	30.86	31.92
Zm00001d033136_P001	Maize	plastid	30.86	31.92
Zm00001d021784_P001	Maize	plastid	31.6	31.6
Zm00001d021763_P001	Maize	plastid	32.71	30.24
Zm00001d040012_P001	Maize	plastid	15.24	30.15
Zm00001d048998_P001	Maize	plastid	31.23	29.68
Zm00001d007267_P002	Maize	plastid	31.23	29.68
Zm00001d006587_P001	Maize	plastid	31.97	29.55
Zm00001d020002_P002	Maize	plastid	33.46	28.57
Zm00001d011218_P001	Maize	plastid	16.73	27.44
Zm00001d006592_P001	Maize	plastid	11.9	26.02
Zm00001d024372_P001	Maize	plastid	21.56	24.47
Zm00001d013766_P001	Maize	plastid	11.15	20.83

Protein Annotations

MapMan:1.1.4.1.5	Gene3D:1.10.3460.10	EntrezGene:100281795	ProteinID:AQK75172.1	UniProt:B6SZ37	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:EU958002	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009644
GO:GO:0009645	GO:GO:0009765	GO:GO:0009768	GO:GO:0009782	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409
GO:GO:0042803	InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF23	SUPFAM:SSF103511
UniParc:UPI000182C1C0	EnsemblPlantsGene:Zm00001d018157	EnsemblPlants:Zm00001d018157_P001	EnsemblPlants:Zm00001d018157_T001	SEG:seg	:

Description

light harvesting complex a/b protein4 light harvesting complex a/b protein4

Coordinates

chr5:-:215693591..215695288

Molecular Weight (calculated)

28969.6 Da

IEP (calculated)

7.368

GRAVY (calculated)

-0.094

Length

269 amino acids

Sequence
(BLAST)

001: MASTVTAANS SHGSALRTRT ASPRPVAGWS CRRTLSTPAH HHHARPSPRA RVVAVRAAGT QRATWLPGLD PPPYLDGTLP GDFGFDPLGL GEEPEALKWY
101: VQAELVHCRF AMAGVAGILF TDLLRVSGNS DLPVWFEAGA AKFDFANTTA LFFVQLFLMG FAETKRYMDF KNPGSQAEEG TFIGLEAALA GQQPGYPGGP
201: LFNPLGLAKD IENAHDEKLK EIKNGRLAMV AMLGFMVQAS VTHAGPIDNL LTHLSDPFNK NIIHTFSSS

Best Arabidopsis Sequence Match ( AT1G45474.2 )
(BLAST)

001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS

Arabidopsis Description

LHCA5Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C639]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.