Factsheet for Zm00001d021784_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90095	Sorghum	plastid	98.88	99.25
TraesCS1B01G451100.1	Wheat	plastid	92.19	92.54
TraesCS1D01G428200.1	Wheat	plastid	92.19	92.54
TraesCS2A01G204800.1	Wheat	plastid	91.82	92.16
Os07t0562700-01	Rice	extracellular, plastid	90.33	91.35
GSMUA_AchrUn_...	Banana	plastid	76.58	89.18
VIT_19s0014g03660.t01	Wine grape	plastid	88.1	89.1
PGSC0003DMT400049550	Potato	plastid	86.62	88.93
Solyc07g063600.2.1	Tomato	nucleus	86.62	88.93
KRH22164	Soybean	nucleus, plastid	88.1	88.76
HORVU2Hr1G040780.7	Barley	plastid	89.59	88.6
KRH27171	Soybean	mitochondrion, nucleus, plastid	88.1	88.43
PGSC0003DMT400022072	Potato	plastid	86.62	87.92
AT5G54270.1	Thale cress	plastid	86.25	87.55
Solyc12g011450.1.1	Tomato	plastid	86.25	87.55
Bra002999.1-P	Field mustard	plastid	85.87	87.17
GSMUA_Achr1P08770_001	Banana	plastid, unclear	77.32	86.31
CDY28778	Canola	plastid	71.75	75.39
Zm00001d033136_P001	Maize	plastid	69.89	72.31
Zm00001d033132_P001	Maize	plastid	69.89	72.31
Zm00001d021435_P001	Maize	plastid	66.91	68.7
Zm00001d011285_P001	Maize	plastid	66.91	68.18
Zm00001d044402_P001	Maize	plastid	66.54	67.8
Zm00001d044401_P001	Maize	plastid	66.54	67.8
Zm00001d044399_P001	Maize	plastid	66.54	67.8
Zm00001d044396_P001	Maize	plastid	66.54	67.8
Zm00001d039040_P001	Maize	plastid	66.17	66.92
Zm00001d009589_P001	Maize	plastid	65.8	66.79
Zm00001d013766_P001	Maize	plastid	34.94	65.28
Zm00001d006592_P001	Maize	plastid	28.25	61.79
Zm00001d048998_P001	Maize	plastid	42.38	40.28
Zm00001d007267_P002	Maize	plastid	42.01	39.93
Zm00001d015385_P001	Maize	plastid	31.23	34.29
Zm00001d020002_P002	Maize	plastid	40.15	34.29
Zm00001d032197_P001	Maize	plastid	31.23	34.01
Zm00001d050403_P001	Maize	plastid	30.48	33.61
Zm00001d046786_P001	Maize	plastid	33.09	33.33
Zm00001d006663_P001	Maize	plastid	31.23	32.31
Zm00001d032051_P001	Maize	mitochondrion	10.78	32.22
Zm00001d018157_P001	Maize	plastid	31.6	31.6
Zm00001d021763_P001	Maize	plastid	33.83	31.27
Zm00001d021906_P001	Maize	plastid	31.23	31.11
Zm00001d006587_P001	Maize	plastid	33.46	30.93
Zm00001d005814_P002	Maize	plastid	29.74	29.52
Zm00001d026599_P001	Maize	plastid	26.77	29.03
Zm00001d001857_P001	Maize	plastid	26.77	28.46
Zm00001d024372_P001	Maize	plastid	17.84	20.25
Zm00001d040012_P001	Maize	plastid	10.04	19.85
Zm00001d011218_P001	Maize	plastid	9.29	15.24

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	UniProt:A0A096QRW1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	ProteinID:ONM58424.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF11	SUPFAM:SSF103511
UniParc:UPI000220AA32	EnsemblPlantsGene:Zm00001d021784	EnsemblPlants:Zm00001d021784_P001	EnsemblPlants:Zm00001d021784_T001	:	:

Description

Chlorophyll a-b binding protein of LHCII type III

Coordinates

chr7:+:162969080..162970349

Molecular Weight (calculated)

28791.5 Da

IEP (calculated)

4.897

GRAVY (calculated)

0.090

Length

269 amino acids

Sequence
(BLAST)

001: MASTIMAATS RIVAAKTPFL GQGRAAANAS PLRDVAAAAA GGRITMGNDL WYGPDRVKYL GPFSAQTPSY LTGEFPGDYG WDTAGLSADP EAFARNRALE
101: VIHGRWAMLG ALGCITPEVL EKWVRVDFKE PVWFKAGAQI FSEGGLDYLG NPNLVHAQSI LAVLGFQVIL MGLVEGFRIN GLDGVGEGNN LYPGGQYFDP
201: LGLADDPVTF AELKVKEIKN GRLAMFSMFG FFVQAIVTGK GPLENLLDHL DDPVANNAWV YATKFAPGS

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.