Factsheet for GSMUA_Achr1P08770_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	plastid	88.8	92.64
Solyc07g063600.2.1	Tomato	nucleus	88.38	81.3
PGSC0003DMT400049550	Potato	plastid	88.38	81.3
VIT_00s0181g00180.t01	Wine grape	plastid	88.38	79.18
VIT_00s0181g00200.t01	Wine grape	plastid	87.97	78.81
OQU90095	Sorghum	plastid	86.31	77.61
Zm00001d021784_P001	Maize	plastid	86.31	77.32
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	42.32	76.69
AT5G54270.1	Thale cress	plastid	84.23	76.6
Os07t0562700-01	Rice	extracellular, plastid	84.23	76.32
KRH27171	Soybean	mitochondrion, nucleus, plastid	84.65	76.12
KRH22164	Soybean	nucleus, plastid	84.23	76.03
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	41.91	75.94
Bra002999.1-P	Field mustard	plastid	83.4	75.85
TraesCS2A01G204800.1	Wheat	plastid	83.82	75.37
TraesCS1D01G428200.1	Wheat	plastid	83.82	75.37
TraesCS1B01G451100.1	Wheat	plastid	83.82	75.37
HORVU2Hr1G040780.7	Barley	plastid	82.57	73.16
CDY28778	Canola	plastid	70.95	66.8
GSMUA_Achr4P33040_001	Banana	plastid, unclear	70.12	64.02
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	66.39	59.93
Zm00001d006592_P001	Maize	plastid	29.05	56.91
GSMUA_Achr4P07890_001	Banana	plastid	36.93	55.97
GSMUA_Achr3P02780_001	Banana	plastid	41.49	34.48
GSMUA_Achr6P12670_001	Banana	plasma membrane	39.0	33.69
GSMUA_Achr10P...	Banana	plastid	38.17	31.94
GSMUA_Achr6P20660_001	Banana	mitochondrion	26.97	31.71
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	31.12	30.61
GSMUA_Achr9P02810_001	Banana	plastid	30.29	30.04
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	17.84	29.45
GSMUA_Achr6P31940_001	Banana	plastid	29.05	29.05
GSMUA_Achr2P06350_001	Banana	unclear	28.63	28.63
GSMUA_Achr9P27480_001	Banana	mitochondrion	37.34	27.95
GSMUA_Achr2P14960_001	Banana	plastid	29.05	27.89
GSMUA_Achr3P04110_001	Banana	plastid	31.54	27.74
GSMUA_Achr9P18200_001	Banana	plastid	15.77	27.74
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	26.97	26.1
GSMUA_Achr4P24090_001	Banana	unclear	26.56	25.4
GSMUA_Achr7P13020_001	Banana	plastid	28.22	25.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	9.13	23.16
GSMUA_Achr10P...	Banana	unclear	13.28	21.48

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G08770_001
EnsemblPlants:GSMUA_Achr1P08770_001	EnsemblPlants:GSMUA_Achr1T08770_001	InterPro:IPR023329	UniProt:M0RY86	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF11	SUPFAM:SSF103511	UniParc:UPI000296A631	SEG:seg	:	:

Description

Chlorophyll a-b binding protein 13, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G08770_001]

Coordinates

chr1:+:6650153..6651322

Molecular Weight (calculated)

25981.4 Da

IEP (calculated)

8.663

GRAVY (calculated)

0.073

Length

241 amino acids

Sequence
(BLAST)

001: MAATLTAASS RATTVVAPSP FLGQTRASSA NPLRDAVPMG KGRITMGNEL WYGPDRVKYL GPFSAQTPSY LKGEFPGDYG WDTAGLSADP EAFARNRALE
101: VIHGRWAMLG AFGCITPEVL EKWVKVDFKE PVWFKAGAQI FSDGGLDYLG NPNLVHAQSI LAVLGCQVVL MGLVEGFRIN GLPGLKVKEI KNGRLAMFSM
201: FGFFVQAIVT GKGPLENLLD HLDNPVANNA WVYATKFVPG S

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.