Factsheet for GSMUA_AchrUn_randomP13860_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P08770_001	Banana	plastid, unclear	92.64	88.8
Solyc07g063600.2.1	Tomato	nucleus	90.48	79.77
PGSC0003DMT400049550	Potato	plastid	90.48	79.77
VIT_00s0181g00180.t01	Wine grape	plastid	91.34	78.44
VIT_00s0181g00200.t01	Wine grape	plastid	90.91	78.07
OQU90095	Sorghum	plastid	89.18	76.87
KRH22164	Soybean	nucleus, plastid	88.74	76.78
Zm00001d021784_P001	Maize	plastid	89.18	76.58
KRH27171	Soybean	mitochondrion, nucleus, plastid	88.74	76.49
AT5G54270.1	Thale cress	plastid	87.45	76.23
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	43.72	75.94
Bra002999.1-P	Field mustard	plastid	87.01	75.85
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	43.29	75.19
Os07t0562700-01	Rice	extracellular, plastid	86.58	75.19
TraesCS2A01G204800.1	Wheat	plastid	86.15	74.25
TraesCS1D01G428200.1	Wheat	plastid	86.15	74.25
TraesCS1B01G451100.1	Wheat	plastid	86.15	74.25
HORVU2Hr1G040780.7	Barley	plastid	85.28	72.43
CDY28778	Canola	plastid	74.03	66.8
GSMUA_Achr4P33040_001	Banana	plastid, unclear	71.43	62.5
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	67.97	58.8
Zm00001d006592_P001	Maize	plastid	30.3	56.91
GSMUA_Achr4P07890_001	Banana	plastid	38.1	55.35
GSMUA_Achr6P12670_001	Banana	plasma membrane	40.69	33.69
GSMUA_Achr3P02780_001	Banana	plastid	41.99	33.45
GSMUA_Achr6P20660_001	Banana	mitochondrion	28.14	31.71
GSMUA_Achr10P...	Banana	plastid	38.96	31.25
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	19.05	30.14
GSMUA_Achr6P31940_001	Banana	plastid	31.17	29.88
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	31.6	29.8
GSMUA_Achr9P02810_001	Banana	plastid	30.74	29.22
GSMUA_Achr2P06350_001	Banana	unclear	29.87	28.63
GSMUA_Achr3P04110_001	Banana	plastid	33.33	28.1
GSMUA_Achr9P27480_001	Banana	mitochondrion	38.53	27.64
GSMUA_Achr2P14960_001	Banana	plastid	29.87	27.49
GSMUA_Achr9P18200_001	Banana	plastid	16.02	27.01
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	28.14	26.1
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	10.39	25.26
GSMUA_Achr7P13020_001	Banana	plastid	29.44	25.0
GSMUA_Achr4P24090_001	Banana	unclear	27.27	25.0
GSMUA_Achr10P...	Banana	unclear	12.99	20.13

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_AchrUn_randomG13860_001
EnsemblPlants:GSMUA_AchrUn_randomP13860_001	EnsemblPlants:GSMUA_AchrUn_randomT13860_001	InterPro:IPR023329	UniProt:M0U8Z5	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF11	SUPFAM:SSF103511	UniParc:UPI000294FECA	:	:	:

Description

Chlorophyll a-b binding protein 13, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13860_001]

Coordinates

chrchrUn_random:-:65561819..65563116

Molecular Weight (calculated)

25217.5 Da

IEP (calculated)

8.435

GRAVY (calculated)

0.049

Length

231 amino acids

Sequence
(BLAST)

001: MASSTVVTPT RFLGQTRTST SANPLRDVVA MGRGRITMGN ELWYGPDRVK YLGPFSAQTP SYLRGEFPGD YGWDTAGLSA DPEAFARNRA LEVIHGRWAM
101: LGALGCITPE VLEKWLKVDF KEPVWFKAGA QIFSEGGLDY LGNPNLVHAQ SILAVLGFQV VLMGLVEGFR INGLAGVKEI KNGRLAMFSM FGFFVQAIVT
201: GKGPLENLLD HLDNPVTNNA WVYATKFVPG S

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.