Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G428200.1 | Wheat | plastid | 95.96 | 97.39 |
| TraesCS1B01G451100.1 | Wheat | plastid | 95.96 | 97.39 |
| TraesCS2A01G204800.1 | Wheat | plastid | 95.59 | 97.01 |
| OQU90095 | Sorghum | plastid | 88.6 | 89.93 |
| Zm00001d021784_P001 | Maize | plastid | 88.6 | 89.59 |
| CDY66572 | Canola | cytosol, extracellular, plastid | 44.85 | 85.31 |
| Solyc12g011450.1.1 | Tomato | plastid | 83.09 | 85.28 |
| GSMUA_AchrUn_... | Banana | plastid | 72.43 | 85.28 |
| PGSC0003DMT400022072 | Potato | plastid | 82.72 | 84.91 |
| Solyc07g063600.2.1 | Tomato | nucleus | 81.62 | 84.73 |
| PGSC0003DMT400049550 | Potato | plastid | 81.62 | 84.73 |
| Os07t0562700-01 | Rice | extracellular, plastid | 82.72 | 84.59 |
| AT5G54270.1 | Thale cress | plastid | 82.35 | 84.53 |
| KRH22164 | Soybean | nucleus, plastid | 82.35 | 83.9 |
| Bra002999.1-P | Field mustard | plastid | 81.62 | 83.77 |
| KRH27171 | Soybean | mitochondrion, nucleus, plastid | 81.99 | 83.21 |
| VIT_19s0014g03660.t01 | Wine grape | plastid | 81.25 | 83.08 |
| GSMUA_Achr1P08770_001 | Banana | plastid, unclear | 73.16 | 82.57 |
| CDY14320 | Canola | plastid | 70.96 | 82.48 |
| CDY18320 | Canola | plastid | 70.59 | 82.05 |
| CDY52238 | Canola | plastid | 70.22 | 81.62 |
| VIT_00s0181g00180.t01 | Wine grape | plastid | 79.78 | 80.67 |
| VIT_00s0181g00200.t01 | Wine grape | plastid | 79.41 | 80.3 |
| CDY28778 | Canola | plastid | 68.38 | 72.66 |
| HORVU5Hr1G124160.1 | Barley | plastid | 66.18 | 67.67 |
| HORVU5Hr1G087250.1 | Barley | plastid | 66.18 | 67.67 |
| HORVU5Hr1G109250.1 | Barley | plastid | 66.18 | 67.67 |
| HORVU1Hr1G088900.1 | Barley | plastid | 66.18 | 67.67 |
| HORVU1Hr1G078380.1 | Barley | plastid | 65.81 | 67.55 |
| HORVU6Hr1G016850.1 | Barley | plastid | 65.81 | 67.29 |
| HORVU1Hr1G088880.1 | Barley | plastid | 65.44 | 66.92 |
| HORVU6Hr1G016880.1 | Barley | plastid | 65.44 | 66.92 |
| HORVU7Hr1G040370.1 | Barley | plastid | 65.44 | 66.92 |
| HORVU6Hr1G091660.1 | Barley | plastid | 65.07 | 66.54 |
| HORVU6Hr1G091650.1 | Barley | plastid | 65.07 | 62.32 |
| HORVU1Hr1G088870.2 | Barley | plastid | 65.44 | 61.59 |
| HORVU6Hr1G016890.6 | Barley | plastid | 65.44 | 61.38 |
| HORVU1Hr1G088920.3 | Barley | plastid | 65.07 | 59.8 |
| HORVU7Hr1G040380.1 | Barley | plastid | 65.81 | 57.37 |
| HORVU1Hr1G089180.1 | Barley | plastid | 65.81 | 56.47 |
| Zm00001d006592_P001 | Maize | plastid | 25.0 | 55.28 |
| HORVU5Hr1G109360.1 | Barley | plastid | 65.81 | 55.25 |
| HORVU5Hr1G109260.4 | Barley | plastid | 65.81 | 55.25 |
| HORVU5Hr1G082420.1 | Barley | plastid | 69.49 | 55.1 |
| HORVU7Hr1G058120.1 | Barley | plastid | 66.54 | 54.52 |
| HORVU1Hr1G088930.2 | Barley | endoplasmic reticulum | 19.85 | 45.76 |
| HORVU2Hr1G041270.2 | Barley | endoplasmic reticulum, plastid | 18.38 | 41.67 |
| HORVU5Hr1G054000.1 | Barley | mitochondrion, plastid | 41.54 | 36.45 |
| HORVU4Hr1G015260.2 | Barley | plastid | 36.03 | 34.03 |
| HORVU5Hr1G066280.1 | Barley | plastid | 29.41 | 32.65 |
| HORVU7Hr1G046320.2 | Barley | plastid | 31.25 | 29.82 |
| HORVU5Hr1G062240.1 | Barley | plastid | 30.88 | 29.47 |
| HORVU2Hr1G036960.4 | Barley | plastid | 30.15 | 29.08 |
| HORVU2Hr1G079920.1 | Barley | cytosol, mitochondrion, plastid | 26.1 | 24.23 |
| HORVU5Hr1G013200.1 | Barley | plastid | 23.16 | 22.26 |
| HORVU2Hr1G079910.1 | Barley | cytosol | 14.34 | 19.21 |
Protein Annotations
| MapMan:1.1.1.1.1 | Gene3D:1.10.3460.10 | UniProt:A0A287HSS6 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 |
| GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU2Hr1G040780 | EnsemblPlants:HORVU2Hr1G040780.7 | InterPro:IPR023329 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF11 |
| SUPFAM:SSF103511 | UniParc:UPI000B47F228 | : | : | : | : |
Description
Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A287HSS6]
Coordinates
chrchr2H:-:197904201..197905093
Molecular Weight (calculated)
29236.9 Da
IEP (calculated)
5.340
GRAVY (calculated)
0.022
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: AAASRAVVAK TPFLSGQGRA ASASPLRDIA AATNGRITMR LSGVRARSQG NDLWYGPDRV KYLGPFSAQT PSYLNGEFPG DYGWDTAGLS ADPEAFARNR
101: ALEVIHGRWA MLGALGCVFP EVLQKWVGVE FKEPVWFKAG SQIFSEGGLD YLGNPNLVHA QSILAVLGFQ VLLMGLVEGF RINGLDGVGE GNDLYPGGQY
201: FDPLGLADDP VTFAELKVKE IKNGRLAMFS MFGFFVQAIV TGKGPLENLF DHLDDPVANN AWVFATKFAP GS
101: ALEVIHGRWA MLGALGCVFP EVLQKWVGVE FKEPVWFKAG SQIFSEGGLD YLGNPNLVHA QSILAVLGFQ VLLMGLVEGF RINGLDGVGE GNDLYPGGQY
201: FDPLGLADDP VTFAELKVKE IKNGRLAMFS MFGFFVQAIV TGKGPLENLF DHLDDPVANN AWVFATKFAP GS
001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA
Arabidopsis Description
LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.