Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P09230_001 | Banana | cytosol, extracellular, plastid | 37.29 | 33.08 |
| HORVU1Hr1G088880.1 | Barley | plastid | 62.71 | 27.82 |
| HORVU6Hr1G091660.1 | Barley | plastid | 62.71 | 27.82 |
| HORVU5Hr1G124160.1 | Barley | plastid | 61.86 | 27.44 |
| HORVU5Hr1G109250.1 | Barley | plastid | 61.86 | 27.44 |
| HORVU5Hr1G087250.1 | Barley | plastid | 61.86 | 27.44 |
| HORVU1Hr1G088900.1 | Barley | plastid | 61.02 | 27.07 |
| HORVU7Hr1G040370.1 | Barley | plastid | 61.02 | 27.07 |
| HORVU6Hr1G016880.1 | Barley | plastid | 61.02 | 27.07 |
| HORVU6Hr1G016850.1 | Barley | plastid | 61.02 | 27.07 |
| HORVU1Hr1G078380.1 | Barley | plastid | 60.17 | 26.79 |
| VIT_10s0003g02900.t01 | Wine grape | plastid | 58.47 | 26.14 |
| VIT_10s0003g02890.t01 | Wine grape | plastid | 58.47 | 26.14 |
| HORVU6Hr1G091650.1 | Barley | plastid | 62.71 | 26.06 |
| HORVU1Hr1G088870.2 | Barley | plastid | 62.71 | 25.61 |
| HORVU1Hr1G088920.3 | Barley | plastid | 62.71 | 25.0 |
| HORVU6Hr1G016890.6 | Barley | plastid | 60.17 | 24.48 |
| HORVU7Hr1G040380.1 | Barley | plastid | 61.86 | 23.4 |
| HORVU2Hr1G041270.2 | Barley | endoplasmic reticulum, plastid | 23.73 | 23.33 |
| HORVU1Hr1G089180.1 | Barley | plastid | 61.86 | 23.03 |
| GSMUA_Achr4P07890_001 | Banana | plastid | 30.51 | 22.64 |
| HORVU7Hr1G058120.1 | Barley | plastid | 62.71 | 22.29 |
| HORVU5Hr1G109260.4 | Barley | plastid | 61.02 | 22.22 |
| HORVU5Hr1G109360.1 | Barley | plastid | 61.02 | 22.22 |
| HORVU2Hr1G040780.7 | Barley | plastid | 45.76 | 19.85 |
| HORVU5Hr1G082420.1 | Barley | plastid | 51.69 | 17.78 |
| HORVU5Hr1G054000.1 | Barley | mitochondrion, plastid | 33.05 | 12.58 |
| HORVU4Hr1G015260.2 | Barley | plastid | 28.81 | 11.81 |
| HORVU2Hr1G036960.4 | Barley | plastid | 25.42 | 10.64 |
| HORVU7Hr1G046320.2 | Barley | plastid | 25.42 | 10.53 |
| HORVU5Hr1G062240.1 | Barley | plastid | 23.73 | 9.82 |
| HORVU2Hr1G079920.1 | Barley | cytosol, mitochondrion, plastid | 22.88 | 9.22 |
| HORVU5Hr1G066280.1 | Barley | plastid | 17.8 | 8.57 |
| HORVU5Hr1G013200.1 | Barley | plastid | 16.95 | 7.07 |
| HORVU2Hr1G079910.1 | Barley | cytosol | 5.93 | 3.45 |
Protein Annotations
| Gene3D:1.10.3460.10 | MapMan:35.1 | UniProt:A0A287GMZ4 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 |
| GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU1Hr1G088930 | EnsemblPlants:HORVU1Hr1G088930.2 | InterPro:IPR023329 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF25 |
| SUPFAM:SSF103511 | SignalP:SignalP-noTM | UniParc:UPI000B48828C | SEG:seg | : | : |
Description
Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A287GMZ4]
Coordinates
chrchr1H:+:543065140..543065498
Molecular Weight (calculated)
8938.9 Da
IEP (calculated)
4.214
GRAVY (calculated)
0.248
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: PSLVHAQSIL AIWACQVVLM GAVEGYRVAG GPLGEIVDPL YPGGSFDPLG LADDPEAFAE LKVKEIKNGR XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXACPTAT FMDMFLNF
101: XXXXACPTAT FMDMFLNF
001: MATSAIQHSS FAGQTTLKPS NDLLRKIGAS NGGGRIIMRR TVKSTPQSIW YGPDRPKYLG PFSENTPSYL TGEYPGDYGW DTAGLSADPE TFAKNRELEV
101: IHSRWAMLGA LGCTFPEILS KNGVKFGEAV WFKAGSQIFS EGGLDYLGNP NLIHAQSILA IWACQVVLMG FIEGYRIGGG PLGEGLDPLY PGGAFDPLNL
201: AEDPEAFSEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPI ENLFDHIADP VANNAWAYAT NFVPGK
101: IHSRWAMLGA LGCTFPEILS KNGVKFGEAV WFKAGSQIFS EGGLDYLGNP NLIHAQSILA IWACQVVLMG FIEGYRIGGG PLGEGLDPLY PGGAFDPLNL
201: AEDPEAFSEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPI ENLFDHIADP VANNAWAYAT NFVPGK
Arabidopsis Description
LHCB2.4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMB4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.