Factsheet for HORVU5Hr1G054000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G177700.1	Wheat	plastid	96.45	96.45
TraesCS5B01G175000.1	Wheat	plastid	96.13	96.44
TraesCS5D01G182000.1	Wheat	plastid	95.81	95.81
EER96508	Sorghum	plastid	87.1	85.99
Zm00001d020002_P002	Maize	plastid	86.13	84.76
Os09t0296800-01	Rice	plastid	87.74	84.74
PGSC0003DMT400025715	Potato	plastid	71.29	69.5
GSMUA_Achr9P27480_001	Banana	mitochondrion	71.61	68.94
Bra008265.1-P	Field mustard	plastid	70.97	67.9
VIT_18s0122g00430.t01	Wine grape	plastid	72.26	67.67
CDY45980	Canola	plastid	70.65	67.59
CDY20401	Canola	plastid	70.32	66.67
AT1G76570.1	Thale cress	plastid	69.68	66.06
KRH06016	Soybean	plastid	70.0	65.36
Solyc04g082920.2.1	Tomato	plastid	43.23	61.47
KRH17548	Soybean	cytosol, peroxisome, plastid	33.87	51.98
HORVU5Hr1G124160.1	Barley	plastid	38.39	44.74
HORVU5Hr1G087250.1	Barley	plastid	38.39	44.74
HORVU6Hr1G016850.1	Barley	plastid	38.06	44.36
HORVU1Hr1G088880.1	Barley	plastid	38.06	44.36
HORVU5Hr1G109250.1	Barley	plastid	38.06	44.36
HORVU1Hr1G078380.1	Barley	plastid	37.42	43.77
HORVU7Hr1G040370.1	Barley	plastid	37.42	43.61
HORVU6Hr1G016880.1	Barley	plastid	37.42	43.61
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	16.77	43.33
HORVU6Hr1G091660.1	Barley	plastid	37.1	43.23
HORVU1Hr1G088900.1	Barley	plastid	36.77	42.86
HORVU2Hr1G040780.7	Barley	plastid	36.45	41.54
HORVU1Hr1G088870.2	Barley	plastid	38.06	40.83
HORVU6Hr1G091650.1	Barley	plastid	37.1	40.49
HORVU6Hr1G016890.6	Barley	plastid	37.74	40.34
HORVU1Hr1G088920.3	Barley	plastid	37.1	38.85
HORVU7Hr1G040380.1	Barley	plastid	37.74	37.5
HORVU5Hr1G109360.1	Barley	plastid	37.74	36.11
HORVU5Hr1G109260.4	Barley	plastid	37.74	36.11
HORVU1Hr1G089180.1	Barley	plastid	36.77	35.96
HORVU7Hr1G058120.1	Barley	plastid	37.42	34.94
HORVU7Hr1G046320.2	Barley	plastid	31.94	34.74
HORVU1Hr1G088930.2	Barley	endoplasmic reticulum	12.58	33.05
HORVU5Hr1G082420.1	Barley	plastid	35.81	32.36
HORVU4Hr1G015260.2	Barley	plastid	28.71	30.9
HORVU2Hr1G036960.4	Barley	plastid	27.74	30.5
HORVU5Hr1G066280.1	Barley	plastid	22.9	28.98
HORVU5Hr1G062240.1	Barley	plastid	25.81	28.07
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	22.26	23.55
HORVU5Hr1G013200.1	Barley	plastid	19.35	21.2
HORVU2Hr1G079910.1	Barley	cytosol	10.0	15.27

Protein Annotations

MapMan:1.1.1.1.5	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637
GO:GO:0009765	GO:GO:0009987	GO:GO:0010218	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:HORVU5Hr1G054000	EnsemblPlants:HORVU5Hr1G054000.1	InterPro:IPR023329
UniProt:M0XX43	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF24	SUPFAM:SSF103511	UniParc:UPI000296C264
SEG:seg	:	:	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:M0XX43]

Coordinates

chrchr5H:-:424351749..424355245

Molecular Weight (calculated)

33913.4 Da

IEP (calculated)

8.294

GRAVY (calculated)

0.217

Length

310 amino acids

Sequence
(BLAST)

001: MMPPLLRFPA PPSAGVVCWR RKSMRVRASW QELAGVLVFS AVPFTAVKAI ANSPLGASLR RRLESRKASA AAEADALRAA AREARSSSFW YGGARPRWLG
101: PLRYDYPEHL AGEFPGDYGF DIAGLGRDPV AFANYFNFEI LHCRWAMLAA LGVVVPELLD LFGIVHFVEP VWWKVGYAKL QGDTLDYLGI PGFRIAGGQG
201: IIVIAICQVL LMVGPEYARY CGIEALEPLG IYLPGDINYP GGALFDPLGL SKDPVAFEEL KVKEIKNGRL AMVAWIGFYI QAAVTGKGPV QNLAEHLSDP
301: LHNNILSPFL

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.