Factsheet for PGSC0003DMT400025715

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1
plasma membrane 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082920.2.1	Tomato	plastid	67.3	98.17
VIT_18s0122g00430.t01	Wine grape	plastid	79.25	76.13
Bra008265.1-P	Field mustard	plastid	75.79	74.38
CDY45980	Canola	plastid	75.47	74.07
KRH06016	Soybean	plastid	77.04	73.8
AT1G76570.1	Thale cress	plastid	75.16	73.09
CDY20401	Canola	plastid	74.84	72.78
EER96508	Sorghum	plastid	70.75	71.66
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	69.5	71.29
TraesCS5B01G175000.1	Wheat	plastid	68.87	70.87
GSMUA_Achr9P27480_001	Banana	mitochondrion	71.38	70.5
TraesCS5A01G177700.1	Wheat	plastid	68.55	70.32
TraesCS5D01G182000.1	Wheat	plastid	68.24	70.0
Zm00001d020002_P002	Maize	plastid	68.87	69.52
Os09t0296800-01	Rice	plastid	68.24	67.6
KRH17548	Soybean	cytosol, peroxisome, plastid	36.79	57.92
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	24.21	48.12
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	24.21	48.12
PGSC0003DMT400034896	Potato	plastid	36.79	43.82
PGSC0003DMT400034898	Potato	plastid	35.85	43.51
PGSC0003DMT400021391	Potato	plastid	35.53	43.46
PGSC0003DMT400021392	Potato	plastid	35.53	43.46
PGSC0003DMT400043054	Potato	plastid	36.48	43.45
PGSC0003DMT400034893	Potato	plastid	35.53	43.13
PGSC0003DMT400034897	Potato	plastid	35.53	43.13
PGSC0003DMT400034894	Potato	plastid	26.42	43.08
PGSC0003DMT400021390	Potato	plastid	35.22	43.08
PGSC0003DMT400034899	Potato	plastid	36.16	43.07
PGSC0003DMT400021422	Potato	plastid	35.85	43.02
PGSC0003DMT400034892	Potato	plastid	35.22	42.75
PGSC0003DMT400092927	Potato	plastid	35.53	42.64
PGSC0003DMT400021389	Potato	plastid	35.53	42.64
PGSC0003DMT400015740	Potato	plastid	34.91	41.89
PGSC0003DMT400010985	Potato	plastid	34.59	41.51
PGSC0003DMT400022072	Potato	plastid	33.96	40.75
PGSC0003DMT400049550	Potato	plastid	32.7	39.69
PGSC0003DMT400068129	Potato	plastid	33.65	37.54
PGSC0003DMT400034902	Potato	plastid	15.41	37.4
PGSC0003DMT400022698	Potato	plastid	35.53	37.05
PGSC0003DMT400060313	Potato	plastid	27.67	35.77
PGSC0003DMT400019031	Potato	plastid	36.48	35.37
PGSC0003DMT400059995	Potato	plastid	27.04	34.96
PGSC0003DMT400083158	Potato	plastid	26.73	34.0
PGSC0003DMT400037285	Potato	extracellular, vacuole	16.67	33.97
PGSC0003DMT400007514	Potato	plastid	27.67	33.85
PGSC0003DMT400050232	Potato	plastid	26.42	33.47
PGSC0003DMT400021871	Potato	plastid	28.93	32.28
PGSC0003DMT400054836	Potato	plastid	27.67	32.23
PGSC0003DMT400020100	Potato	plastid	27.36	31.87
PGSC0003DMT400032790	Potato	plastid	24.53	30.47
PGSC0003DMT400032791	Potato	plastid	23.9	29.69
PGSC0003DMT400011381	Potato	plastid	20.13	24.06

Protein Annotations

MapMan:1.1.1.1.5	Gene3D:1.10.3460.10	EntrezGene:102590605	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637
GO:GO:0009765	GO:GO:0009987	GO:GO:0010218	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M1ALX2	PFAM:PF00504
EnsemblPlantsGene:PGSC0003DMG401009929	PGSC:PGSC0003DMG401009929	EnsemblPlants:PGSC0003DMT400025715	PANTHER:PTHR21649	PANTHER:PTHR21649:SF24	SUPFAM:SSF103511
UniParc:UPI000295022C	RefSeq:XP_006342200.1	:	:	:	:

Description

Light-harvesting complex II protein Lhcb7 [Source:PGSC_GENE;Acc:PGSC0003DMG401009929]

Coordinates

chr4:+:72040559..72044649

Molecular Weight (calculated)

35384.0 Da

IEP (calculated)

7.126

GRAVY (calculated)

0.030

Length

318 amino acids

Sequence
(BLAST)

001: MTLLQLPHPS SSVPKDQRLY RNASALDPFS RHRASWQELA GVLVFSAIPF TAVKAIANST FGETLRKRLE ERKKVAVENS AKFKALAQMA RNDSIWYGED
101: RPRWLGPISY DYPAYLNGEL PGDYGFDICG LSKDPVALQN YFNYEILHGR WAMLAALGAL IPELLNLTGL FQFVEPVWWR VGYSKLKGDT LDYLGIPGLH
201: LAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGLYLP GDINYPGGVL FDPLNLSKDP MAFEELKVKE IKNGRLAMVA WLGFYVQAAL TGKGPVQNLL
301: EHISDPFHNN LLSILKSL

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.