Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 11
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035006 | Potato | cytosol, extracellular, vacuole | 60.38 | 100.0 |
| PGSC0003DMT400035007 | Potato | cytosol, extracellular, vacuole | 60.38 | 100.0 |
| Solyc02g071030.1.1 | Tomato | plastid | 99.62 | 99.62 |
| Solyc02g071010.1.1 | Tomato | plastid | 99.62 | 99.62 |
| Solyc02g070970.1.1 | Tomato | plastid | 99.62 | 99.62 |
| Solyc02g070950.1.1 | Tomato | plastid | 99.62 | 99.62 |
| Solyc02g070940.1.1 | Tomato | plastid | 99.62 | 99.62 |
| PGSC0003DMT400092927 | Potato | plastid | 99.62 | 99.62 |
| PGSC0003DMT400021390 | Potato | plastid | 97.74 | 99.62 |
| Solyc02g070990.1.1 | Tomato | plastid | 98.87 | 98.87 |
| Solyc02g070980.1.1 | Tomato | nucleus, plastid | 98.87 | 98.87 |
| PGSC0003DMT400021392 | Potato | plastid | 96.23 | 98.08 |
| PGSC0003DMT400021422 | Potato | plastid | 97.74 | 97.74 |
| PGSC0003DMT400021391 | Potato | plastid | 95.09 | 96.92 |
| TraesCSU01G086800.1 | Wheat | cytosol | 35.47 | 95.92 |
| PGSC0003DMT400034897 | Potato | plastid | 93.96 | 95.04 |
| Solyc03g005770.1.1 | Tomato | nucleus | 95.09 | 94.38 |
| PGSC0003DMT400034892 | Potato | plastid | 93.21 | 94.27 |
| PGSC0003DMT400034898 | Potato | plastid | 93.21 | 94.27 |
| PGSC0003DMT400043054 | Potato | plastid | 94.72 | 94.01 |
| PGSC0003DMT400034899 | Potato | plastid | 94.72 | 94.01 |
| Solyc03g005760.1.1 | Tomato | nucleus | 94.34 | 93.63 |
| PGSC0003DMT400034896 | Potato | plastid | 93.96 | 93.26 |
| PGSC0003DMT400034893 | Potato | plastid | 92.08 | 93.13 |
| KRH08634 | Soybean | endoplasmic reticulum | 43.4 | 92.74 |
| PGSC0003DMT400034894 | Potato | plastid | 67.55 | 91.79 |
| PGSC0003DMT400034902 | Potato | plastid | 43.77 | 88.55 |
| PGSC0003DMT400022698 | Potato | plastid | 99.25 | 86.23 |
| PGSC0003DMT400015740 | Potato | plastid | 79.62 | 79.62 |
| PGSC0003DMT400010985 | Potato | plastid | 78.49 | 78.49 |
| PGSC0003DMT400019031 | Potato | plastid | 95.09 | 76.83 |
| CDY17250 | Canola | mitochondrion, plastid | 47.17 | 76.69 |
| PGSC0003DMT400049550 | Potato | plastid | 70.19 | 70.99 |
| PGSC0003DMT400022072 | Potato | plastid | 70.19 | 70.19 |
| PGSC0003DMT400068129 | Potato | plastid | 47.17 | 43.86 |
| PGSC0003DMT400037285 | Potato | extracellular, vacuole | 23.77 | 40.38 |
| PGSC0003DMT400059995 | Potato | plastid | 35.47 | 38.21 |
| PGSC0003DMT400060313 | Potato | plastid | 34.72 | 37.4 |
| PGSC0003DMT400025715 | Potato | plastid | 42.64 | 35.53 |
| PGSC0003DMT400007514 | Potato | plastid | 34.34 | 35.0 |
| PGSC0003DMT400054836 | Potato | plastid | 35.85 | 34.8 |
| PGSC0003DMT400083158 | Potato | plastid | 32.45 | 34.4 |
| PGSC0003DMT400020100 | Potato | plastid | 34.72 | 33.7 |
| PGSC0003DMT400021871 | Potato | plastid | 36.23 | 33.68 |
| PGSC0003DMT400050232 | Potato | plastid | 31.32 | 33.07 |
| PGSC0003DMT400032791 | Potato | plastid | 28.3 | 29.3 |
| PGSC0003DMT400032790 | Potato | plastid | 27.92 | 28.91 |
| PGSC0003DMT400011381 | Potato | plastid | 23.02 | 22.93 |
Protein Annotations
| MapMan:1.1.1.1.1 | Gene3D:1.10.3460.10 | EntrezGene:102593779 | ProteinID:AAA80589 | ProteinID:AAA80589.1 | ProteinID:AAA80591 |
| ProteinID:AAA80591.1 | ProteinID:AFW90594 | ProteinID:AFW90594.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 |
| GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
| InterPro:IPR023329 | EMBL:JX576238 | PFAM:PF00504 | EnsemblPlantsGene:PGSC0003DMG400008298 | PGSC:PGSC0003DMG400008298 | EnsemblPlants:PGSC0003DMT400021389 |
| PANTHER:PTHR21649 | PANTHER:PTHR21649:SF25 | UniProt:Q41421 | SUPFAM:SSF103511 | EMBL:U20983 | EMBL:U21111 |
| UniParc:UPI000009F579 | RefSeq:XP_006365572.1 | SEG:seg | : | : | : |
Description
Chlorophyll a/b binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008298]
Coordinates
chr2:+:30122170..30123048
Molecular Weight (calculated)
28059.5 Da
IEP (calculated)
4.904
GRAVY (calculated)
0.066
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAATMALSS PSFAGQAVKL SPSASEISGN GRITMRKAVA KSAPSSSPWY GPDRVKYLGP FSGESPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WACQVVLMGA VEGYRIAGGP LGEVVDPLYP GGSFDPLGLA
201: DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WACQVVLMGA VEGYRIAGGP LGEVVDPLYP GGSFDPLGLA
201: DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK
001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.3Chlorophyll a-b binding protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P04778]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.