Factsheet for PGSC0003DMT400007514

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009200.1.1	Tomato	nucleus, plastid	97.31	97.31
VIT_11s0016g00730.t01	Wine grape	plastid	82.31	82.63
KRH37524	Soybean	plastid	80.0	80.0
KRH12566	Soybean	plastid	79.62	79.62
Bra016522.1-P	Field mustard	plastid	76.92	75.19
CDX83783	Canola	plastid	76.92	75.19
CDX96677	Canola	plastid	76.92	75.19
GSMUA_Achr9P18200_001	Banana	plastid	38.85	73.72
AT1G19150.1	Thale cress	plastid	76.54	73.7
TraesCS5B01G210800.2	Wheat	cytosol, plastid	64.23	70.17
Os09t0439500-01	Rice	plastid	70.77	69.7
Zm00001d005814_P002	Maize	plastid	71.15	68.27
TraesCS5A01G213000.1	Wheat	plastid	69.62	66.3
KXG35708	Sorghum	plastid	70.0	66.18
TraesCS5D01G219100.1	Wheat	plastid	69.23	65.45
HORVU5Hr1G062240.1	Barley	plastid	70.77	64.56
PGSC0003DMT400037285	Potato	extracellular, vacuole	38.46	64.1
PGSC0003DMT400083158	Potato	plastid	43.46	45.2
PGSC0003DMT400050232	Potato	plastid	43.46	45.02
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	24.23	39.38
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	24.23	39.38
PGSC0003DMT400060313	Potato	plastid	36.92	39.02
PGSC0003DMT400059995	Potato	plastid	36.54	38.62
PGSC0003DMT400054836	Potato	plastid	40.0	38.1
PGSC0003DMT400020100	Potato	plastid	40.0	38.1
PGSC0003DMT400032791	Potato	plastid	35.38	35.94
PGSC0003DMT400032790	Potato	plastid	35.0	35.55
PGSC0003DMT400034896	Potato	plastid	35.77	34.83
PGSC0003DMT400034892	Potato	plastid	35.0	34.73
PGSC0003DMT400034893	Potato	plastid	35.0	34.73
PGSC0003DMT400034897	Potato	plastid	35.0	34.73
PGSC0003DMT400034898	Potato	plastid	35.0	34.73
PGSC0003DMT400034899	Potato	plastid	35.38	34.46
PGSC0003DMT400021389	Potato	plastid	35.0	34.34
PGSC0003DMT400092927	Potato	plastid	35.0	34.34
PGSC0003DMT400021391	Potato	plastid	34.23	34.23
PGSC0003DMT400021392	Potato	plastid	34.23	34.23
PGSC0003DMT400043054	Potato	plastid	35.0	34.08
PGSC0003DMT400021422	Potato	plastid	34.62	33.96
PGSC0003DMT400021390	Potato	plastid	33.85	33.85
PGSC0003DMT400010985	Potato	plastid	33.08	32.45
PGSC0003DMT400034894	Potato	plastid	24.23	32.31
PGSC0003DMT400021871	Potato	plastid	35.38	32.28
PGSC0003DMT400015740	Potato	plastid	32.69	32.08
PGSC0003DMT400022072	Potato	plastid	32.31	31.7
PGSC0003DMT400049550	Potato	plastid	31.92	31.68
PGSC0003DMT400011381	Potato	plastid	32.31	31.58
PGSC0003DMT400068129	Potato	plastid	34.23	31.23
PGSC0003DMT400022698	Potato	plastid	35.38	30.16
PGSC0003DMT400034902	Potato	plastid	14.62	29.01
PGSC0003DMT400019031	Potato	plastid	36.54	28.96
PGSC0003DMT400025715	Potato	plastid	33.85	27.67

Protein Annotations

MapMan:1.1.4.1.6	Gene3D:1.10.3460.10	EntrezGene:102580711	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	UniProt:M0ZT46	PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400002901	PGSC:PGSC0003DMG400002901	EnsemblPlants:PGSC0003DMT400007514
PANTHER:PTHR21649	PANTHER:PTHR21649:SF5	SUPFAM:SSF103511	UniParc:UPI000296C93F	RefSeq:XP_006345258.1	:

Description

Chlorophyll A/B binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002901]

Coordinates

chr12:+:3197921..3200565

Molecular Weight (calculated)

28856.7 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.036

Length

260 amino acids

Sequence
(BLAST)

001: MALAIHSTAF SSIPIRELPT KTFSGKFTTC VLSKKSRLYA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPELL KWFAQAELIH
101: SRWAMLAVAG ILIPEWLESL GFIDNFSWYD AGEREYFADS TTLFVVQLAL MGWVEGRRWA DIVNPGCVDI EPKVPHKKKP KTDVGYPGGL WFDPFMWGRG
201: SPEPVMVLRT KEIKNGRLAM LAFVGFCFQA VYTGQGPIEN LMSHLADPGH NNIFAAFTSQ

Best Arabidopsis Sequence Match ( AT1G19150.1 )
(BLAST)

001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH

Arabidopsis Description

LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.