Factsheet for PGSC0003DMT400034894

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G086800.1	Wheat	cytosol	47.69	94.9
KRH08634	Soybean	endoplasmic reticulum	58.46	91.94
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	65.13	79.38
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	65.13	79.38
PGSC0003DMT400034897	Potato	plastid	96.41	71.76
PGSC0003DMT400034893	Potato	plastid	96.41	71.76
PGSC0003DMT400034892	Potato	plastid	96.41	71.76
PGSC0003DMT400034896	Potato	plastid	96.92	70.79
PGSC0003DMT400034898	Potato	plastid	94.87	70.61
PGSC0003DMT400021390	Potato	plastid	92.31	69.23
PGSC0003DMT400034899	Potato	plastid	94.36	68.91
PGSC0003DMT400043054	Potato	plastid	93.33	68.16
PGSC0003DMT400021391	Potato	plastid	90.77	68.08
PGSC0003DMT400092927	Potato	plastid	92.31	67.92
PGSC0003DMT400021392	Potato	plastid	90.26	67.69
PGSC0003DMT400021389	Potato	plastid	91.79	67.55
PGSC0003DMT400021422	Potato	plastid	91.28	67.17
CDY17250	Canola	mitochondrion, plastid	51.28	61.35
PGSC0003DMT400022698	Potato	plastid	92.82	59.34
PGSC0003DMT400019031	Potato	plastid	95.9	57.01
PGSC0003DMT400010985	Potato	plastid	73.85	54.34
PGSC0003DMT400015740	Potato	plastid	73.85	54.34
PGSC0003DMT400022072	Potato	plastid	66.67	49.06
PGSC0003DMT400049550	Potato	plastid	65.64	48.85
PGSC0003DMT400034902	Potato	plastid	31.79	47.33
PGSC0003DMT400037285	Potato	extracellular, vacuole	26.15	32.69
PGSC0003DMT400068129	Potato	plastid	46.15	31.58
PGSC0003DMT400060313	Potato	plastid	33.85	26.83
PGSC0003DMT400059995	Potato	plastid	33.33	26.42
PGSC0003DMT400025715	Potato	plastid	43.08	26.42
PGSC0003DMT400007514	Potato	plastid	32.31	24.23
PGSC0003DMT400083158	Potato	plastid	30.26	23.6
PGSC0003DMT400021871	Potato	plastid	33.85	23.16
PGSC0003DMT400054836	Potato	plastid	31.28	22.34
PGSC0003DMT400020100	Potato	plastid	30.77	21.98
PGSC0003DMT400050232	Potato	plastid	27.69	21.51
PGSC0003DMT400032790	Potato	plastid	24.62	18.75
PGSC0003DMT400032791	Potato	plastid	24.1	18.36
PGSC0003DMT400011381	Potato	plastid	20.0	14.66

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329
UniProt:M1B1G9	PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400013413	PGSC:PGSC0003DMG400013413	EnsemblPlants:PGSC0003DMT400034894	PANTHER:PTHR21649
PANTHER:PTHR21649:SF56	SUPFAM:SSF103511	UniParc:UPI000295F449	:	:	:

Description

Chlorophyll a/b-binding protein PS II-Type I [Source:PGSC_GENE;Acc:PGSC0003DMG400013413]

Coordinates

chr3:+:753559..754268

Molecular Weight (calculated)

20555.6 Da

IEP (calculated)

6.528

GRAVY (calculated)

0.022

Length

195 amino acids

Sequence
(BLAST)

001: MALSSSTFAG KAVKLSPSSS EVTGNGRVTM RKSVAKAKPA SSGSPWYGPD RVKYLGPFSG EAPSYLNWSE GGLDYLGNPS LVHAQSILAI WACQVVLMGA
101: VEGYRIAGGP LGEVVDPLYP GGSFDPLGLA DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLVDHLADPV NNNAWAFATN FVPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.