Factsheet for PGSC0003DMT400050232

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115900.2.1	Tomato	plastid	98.8	98.8
PGSC0003DMT400083158	Potato	plastid	88.84	89.2
Bra018144.1-P	Field mustard	plastid	86.45	86.11
CDX99044	Canola	plastid	86.45	86.11
CDY47410	Canola	plastid	86.45	86.11
GSMUA_Achr2P14960_001	Banana	plastid	85.66	85.66
AT3G47470.1	Thale cress	plastid	84.86	84.86
GSMUA_Achr4P24090_001	Banana	unclear	84.46	84.13
Zm00001d050403_P001	Maize	plastid	76.89	79.1
Zm00001d032197_P001	Maize	plastid	76.49	77.73
KXG25214	Sorghum	plastid	77.69	77.69
Os08t0435900-01	Rice	mitochondrion	74.5	76.64
HORVU5Hr1G066280.1	Barley	plastid	73.31	75.1
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	73.31	75.1
TraesCS5B01G227900.1	Wheat	plastid	73.31	75.1
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	72.91	74.69
PGSC0003DMT400037285	Potato	extracellular, vacuole	31.08	50.0
PGSC0003DMT400007514	Potato	plastid	45.02	43.46
PGSC0003DMT400059995	Potato	plastid	37.45	38.21
PGSC0003DMT400060313	Potato	plastid	37.45	38.21
PGSC0003DMT400054836	Potato	plastid	39.84	36.63
PGSC0003DMT400020100	Potato	plastid	39.04	35.9
PGSC0003DMT400032791	Potato	plastid	34.26	33.59
PGSC0003DMT400032790	Potato	plastid	33.47	32.81
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	20.72	32.5
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	20.72	32.5
PGSC0003DMT400021871	Potato	plastid	36.26	31.93
PGSC0003DMT400021422	Potato	plastid	33.47	31.7
PGSC0003DMT400011381	Potato	plastid	33.47	31.58
PGSC0003DMT400021392	Potato	plastid	32.67	31.54
PGSC0003DMT400034896	Potato	plastid	33.47	31.46
PGSC0003DMT400092927	Potato	plastid	33.07	31.32
PGSC0003DMT400021389	Potato	plastid	33.07	31.32
PGSC0003DMT400021391	Potato	plastid	32.27	31.15
PGSC0003DMT400021390	Potato	plastid	32.27	31.15
PGSC0003DMT400043054	Potato	plastid	32.67	30.71
PGSC0003DMT400034897	Potato	plastid	31.87	30.53
PGSC0003DMT400034898	Potato	plastid	31.87	30.53
PGSC0003DMT400034899	Potato	plastid	32.27	30.34
PGSC0003DMT400049550	Potato	plastid	31.47	30.15
PGSC0003DMT400034893	Potato	plastid	31.47	30.15
PGSC0003DMT400034892	Potato	plastid	31.47	30.15
PGSC0003DMT400022072	Potato	plastid	31.47	29.81
PGSC0003DMT400010985	Potato	plastid	30.68	29.06
PGSC0003DMT400015740	Potato	plastid	30.28	28.68
PGSC0003DMT400068129	Potato	plastid	32.27	28.42
PGSC0003DMT400034894	Potato	plastid	21.51	27.69
PGSC0003DMT400022698	Potato	plastid	33.47	27.54
PGSC0003DMT400034902	Potato	plastid	14.34	27.48
PGSC0003DMT400025715	Potato	plastid	33.47	26.42
PGSC0003DMT400019031	Potato	plastid	32.27	24.7

Protein Annotations

MapMan:1.1.4.1.4	Gene3D:1.10.3460.10	EMBL:AM265630	ProteinID:CAK24966	ProteinID:CAK24966.1	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M1BPZ2	PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400019508
PGSC:PGSC0003DMG400019508	EnsemblPlants:PGSC0003DMT400050232	PANTHER:PTHR21649	PANTHER:PTHR21649:SF4	SUPFAM:SSF103511	TMHMM:TMhelix
UniParc:UPI0002948A26	:	:	:	:	:

Description

Chlorophyll a/b binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019508]

Coordinates

chr3:+:55762891..55764115

Molecular Weight (calculated)

27770.0 Da

IEP (calculated)

6.946

GRAVY (calculated)

-0.180

Length

251 amino acids

Sequence
(BLAST)

001: MATVTTQASA AIFRPCASRT RFLTGSSGKL NREVSFRPST SSSYNSFKVE AKKGQWLPGL ASPDYLDGSL PGDNGFDPLG LAEDPENLKW FIQAELVNGR
101: WAMLGVAGML LPEVFTSIGI LNVPKWYDAG KSEYFASSST LFVIEFILFH YVEIRRWQDI KNPGSVNQDP IFKSYSLPPN KCGYPGGIFN PLNFAPTEEA
201: KEKELANGRL AMLAFLGFIV QHNVTGKGPF DNLLQHISDP WHNTIIQTLS N

Best Arabidopsis Sequence Match ( AT3G47470.1 )
(BLAST)

001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N

Arabidopsis Description

LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.