Factsheet for Zm00001d032197_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050403_P001	Maize	plastid	95.55	96.72
Os08t0435900-01	Rice	mitochondrion	88.66	89.75
TraesCS5B01G227900.1	Wheat	plastid	84.62	85.31
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	84.62	85.31
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	84.21	84.9
HORVU5Hr1G066280.1	Barley	plastid	84.21	84.9
GSMUA_Achr2P14960_001	Banana	plastid	82.19	80.88
GSMUA_Achr4P24090_001	Banana	unclear	80.97	79.37
KRH54568	Soybean	nucleus, plastid	80.57	78.97
KRH63318	Soybean	plastid	80.57	78.97
PGSC0003DMT400083158	Potato	plastid	79.76	78.8
Solyc06g069730.2.1	Tomato	plastid	79.76	78.8
VIT_17s0000g06350.t01	Wine grape	plastid	80.16	78.57
Bra018144.1-P	Field mustard	plastid	78.95	77.38
CDY47410	Canola	plastid	78.95	77.38
CDX99044	Canola	plastid	78.95	77.38
PGSC0003DMT400050232	Potato	plastid	77.73	76.49
AT3G47470.1	Thale cress	plastid	77.73	76.49
Solyc03g115900.2.1	Tomato	plastid	77.73	76.49
Zm00001d006663_P001	Maize	plastid	49.39	46.92
Zm00001d021906_P001	Maize	plastid	50.61	46.3
Zm00001d005814_P002	Maize	plastid	45.34	41.33
Zm00001d018157_P001	Maize	plastid	44.13	40.52
Zm00001d032051_P001	Maize	mitochondrion	14.57	40.0
Zm00001d046786_P001	Maize	plastid	40.89	37.83
Zm00001d015385_P001	Maize	plastid	36.44	36.73
Zm00001d021784_P001	Maize	plastid	34.01	31.23
Zm00001d039040_P001	Maize	plastid	33.6	31.2
Zm00001d026599_P001	Maize	plastid	31.17	31.05
Zm00001d009589_P001	Maize	plastid	33.2	30.94
Zm00001d001857_P001	Maize	plastid	31.58	30.83
Zm00001d033136_P001	Maize	plastid	32.39	30.77
Zm00001d033132_P001	Maize	plastid	32.39	30.77
Zm00001d011285_P001	Maize	plastid	32.79	30.68
Zm00001d021763_P001	Maize	plastid	36.03	30.58
Zm00001d006587_P001	Maize	plastid	36.03	30.58
Zm00001d044396_P001	Maize	plastid	32.39	30.3
Zm00001d044399_P001	Maize	plastid	31.98	29.92
Zm00001d044401_P001	Maize	plastid	31.98	29.92
Zm00001d044402_P001	Maize	plastid	31.98	29.92
Zm00001d021435_P001	Maize	plastid	31.58	29.77
Zm00001d040012_P001	Maize	plastid	16.19	29.41
Zm00001d006592_P001	Maize	plastid	14.57	29.27
Zm00001d011218_P001	Maize	plastid	18.22	27.44
Zm00001d048998_P001	Maize	plastid	29.55	25.8
Zm00001d007267_P002	Maize	plastid	29.55	25.8
Zm00001d024372_P001	Maize	plastid	23.48	24.47
Zm00001d013766_P001	Maize	plastid	14.17	24.31
Zm00001d020002_P002	Maize	plastid	30.36	23.81

Protein Annotations

MapMan:1.1.4.1.4	Gene3D:1.10.3460.10	EntrezGene:100284001	UniProt:B4FV94	EMBL:BT041032	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:EU956255	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	ProteinID:ONM04563.1	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF4	SUPFAM:SSF103511	UniParc:UPI00017B7532	EnsemblPlantsGene:Zm00001d032197	EnsemblPlants:Zm00001d032197_P001
EnsemblPlants:Zm00001d032197_T001	SEG:seg	:	:	:	:

Description

Chlorophyll a-b binding protein 4 chloroplastic

Coordinates

chr1:-:216771029..216772472

Molecular Weight (calculated)

26959.1 Da

IEP (calculated)

7.162

GRAVY (calculated)

-0.127

Length

247 amino acids

Sequence
(BLAST)

001: MASVTARAPV AALRPSSASL KSSSAFLGHS SRLGRTASPT RRSLKAEAKG EWLPGLPSPS YLDGSLAGDN GFDPLGLAED PENLRWFVQA ELVNGRWAML
101: GVAGMLIPEV LTKAGLINAP QWYDAGKSEY FASSSTLFVV EFILFHYVEI RRWQDIKNPG SVNQDPIFKS YSLPPHECGY PGSVFNPLNF APTLEAKEKE
201: LANGRLAMLA FLGFLIQHNV TGKGPFDNLL QHLSDPWHNT IIQTFSG

Best Arabidopsis Sequence Match ( AT3G47470.1 )
(BLAST)

001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N

Arabidopsis Description

LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.